Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73890 78 / 3e-18 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G55260 63 / 3e-12 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT2G44290 60 / 3e-11 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G44300 60 / 3e-11 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G03103 59 / 6e-11 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G22600 54 / 2e-09 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G48130 53 / 7e-09 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G05450 49 / 2e-07 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT3G43720 48 / 4e-07 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT4G14815 46 / 2e-06 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032488 [exp] 276 / 7e-96 AT1G73890 84 / 2e-20 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10017749 [exp] 67 / 9e-14 AT2G44290 115 / 3e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10033076 [exp] 66 / 2e-13 AT2G44290 114 / 6e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10014681 [exp] 59 / 5e-11 AT3G22600 126 / 3e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10035975 [exp] 59 / 3e-10 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10042449 [exp] 55 / 2e-09 AT1G55260 160 / 3e-49 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10042611 [exp] 52 / 2e-08 AT3G22600 142 / 1e-43 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10039348 [exp] 52 / 2e-08 AT3G22600 163 / 7e-52 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10010572 [exp] 51 / 5e-08 AT3G22600 162 / 2e-51 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053700 [exp] 110 / 1e-30 AT1G73890 113 / 2e-31 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.015G054000 [exp] 110 / 1e-30 AT1G73890 113 / 2e-31 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G232000 [exp] 60 / 3e-11 AT2G44300 179 / 4e-57 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G008500 [exp] 56 / 5e-10 AT2G44290 155 / 6e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G195700 [exp] 55 / 1e-09 AT2G44290 145 / 6e-44 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.003G217000 [exp] 53 / 6e-09 AT1G55260 149 / 5e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.010G085400 [exp] 52 / 2e-08 AT3G22600 140 / 1e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.008G155100 [exp] 51 / 2e-08 AT3G22600 149 / 2e-46 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.013G131500 [exp] 48 / 3e-07 AT5G13900 122 / 2e-36 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.002G050200 [exp] 44 / 1e-05 AT2G48140 127 / 1e-37 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10042984 pacid=23168146 polypeptide=Lus10042984 locus=Lus10042984.g ID=Lus10042984.BGIv1.0 annot-version=v1.0 ATGGTCTGGTTCCTTTTCCTGCTACTGGCTACAGCCACAGCCACCAGTACTAGTTCCCACCAACCCCCAACCATTACCGAATGCACTCCGGGACTCCTCC AGCTCACTCCTTGCGCACCATATGTGCAAGGCATTGCCTCTTCGCCACTCCAATCCTGCTGCGACGATCTCATTCAGCTCTACAAGCAGCAACCCGAATG CCTCTGCCTCATCATCACCACCCCTAACTTGGGCGGATTCCCTATCAACACCACTCTTGCCATGCACCTCCCTTCACTTTGCGGCATCCGAATCAAGGAT CCCTCCACTTCCTGCTTTCCTGGTGCCTCCTCGGTGCCAGCTCCTCCTCTCCTGCTGCCGCCACATGCTAATTCCTCACTTGCTTCAAACTCCACTGCTC CATCAACTGCAGTAGTTCAGATTCCACGGAGGCCGGTTATAATGGGGATGGGGATTGGTAGGAGCTCCAGAGTAATAGTTTGTACAGAAATTTTAATGGT GCTTCTGGTTTGGTGCCTCTTCCAGCTGTTTCTCCACCAGTGA
AA sequence Show only first row Show all	>Lus10042984 pacid=23168146 polypeptide=Lus10042984 locus=Lus10042984.g ID=Lus10042984.BGIv1.0 annot-version=v1.0 MVWFLFLLLATATATSTSSHQPPTITECTPGLLQLTPCAPYVQGIASSPLQSCCDDLIQLYKQQPECLCLIITTPNLGGFPINTTLAMHLPSLCGIRIKD PSTSCFPGASSVPAPPLLLPPHANSSLASNSTAPSTAVVQIPRRPVIMGMGIGRSSRVIVCTEILMVLLVWCLFQLFLHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10042984 [exp]	0	1
AT2G23755			unknown protein		Lus10000575 [exp]	1.0	0.7941
AT2G39040			Peroxidase superfamily protein...		Lus10021957 [exp]	1.4	0.7879
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10002803 [exp]	4.9	0.7480
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003296 [exp]	5.5	0.7404
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023540 [exp]	5.9	0.7427
AT4G35500			Protein kinase superfamily pro...		Lus10035984 [exp]	8.8	0.7871
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010873 [exp]	15.9	0.7143
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	17.9	0.7134
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	19.0	0.7134
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10014056 [exp]	20.0	0.7134

Compare expression of checked genes

Lus10042984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.