Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73875 73 / 1e-15 DNAse I-like superfamily protein (.1) AT3G18500 64 / 1e-12 DNAse I-like superfamily protein (.1.2.3) AT5G11350 40 / 0.0003 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032490 [exp] 100 / 3e-25 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1) Lus10036357 [exp] 63 / 6e-12 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10014775 [exp] 62 / 1e-11 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G057100 [exp] 72 / 4e-15 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042985 pacid=23167907 polypeptide=Lus10042985 locus=Lus10042985.g ID=Lus10042985.BGIv1.0 annot-version=v1.0 ATGGCAGTTCGTGTTCATATATTTCTCTTCAATGAGAGATTGATTCCATCACTCTCTGATAAATTTGGTAAATATCTTCAGGGGAACAGCAGATCAAGTG GCACTTGTGTAGAACCATTGGCTACCTCCTACCACTCGAAATTTATGGGAACCGTTGATTATATTTGGTACGCTGATGTCGTACTACCAAGTTACAAGAT TGTGTATAGTGTTCATGTGAATACTAGTAGTAACTCAAGTAATGGATGCAGGCATACAAAGGAACTTGTACCTCTAAGAGTTCTTCAAACCTTACCCCTT GATATTTTGAAGAGAAATGCAGGTCTACCTAGCAAGACGACGGTGATGCTTAATCAGTTCTTTTCCTGGATCCAAATCTCCAAGCCATCAGGTATGCAAA GGGTAACTGAATGGGGATGCTTTGCTGCGAAAGGGAGTTCTGCGTTCTGCCGTTCTTCGACCCCCCCTTATTTTTTCTGA
AA sequence Show only first row Show all	>Lus10042985 pacid=23167907 polypeptide=Lus10042985 locus=Lus10042985.g ID=Lus10042985.BGIv1.0 annot-version=v1.0 MAVRVHIFLFNERLIPSLSDKFGKYLQGNSRSSGTCVEPLATSYHSKFMGTVDYIWYADVVLPSYKIVYSVHVNTSSNSSNGCRHTKELVPLRVLQTLPL DILKRNAGLPSKTTVMLNQFFSWIQISKPSGMQRVTEWGCFAAKGSSAFCRSSTPPYFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73875			DNAse I-like superfamily prote...		Lus10042985 [exp]	0	1
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10026213 [exp]	8.0	0.8526
AT2G14520			CBS domain-containing protein ...		Lus10012476 [exp]	9.8	0.8197
AT1G75720			Plant protein of unknown funct...		Lus10036971 [exp]	17.5	0.8401
					Lus10014171 [exp]	21.4	0.8259
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10001999 [exp]	32.4	0.8194
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	41.0	0.8148
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10007464 [exp]	42.2	0.8040
AT5G35740			Carbohydrate-binding X8 domain...		Lus10038801 [exp]	44.7	0.7908
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10042397 [exp]	44.9	0.8151
AT5G66900			Disease resistance protein (CC...		Lus10020779 [exp]	49.6	0.8095

Compare expression of checked genes

Lus10042985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.