Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61530 512 / 0 small G protein family protein / RhoGAP family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032491 [exp] 633 / 0 AT5G61530 442 / 1e-155 small G protein family protein / RhoGAP family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233400 [exp] 590 / 0 AT5G61530 535 / 0.0 small G protein family protein / RhoGAP family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [flax] [poplar] GAP PF00620 [flax] [poplar] RhoGAP RhoGAP domain
Representative CDS sequence Show only first row Show all	>Lus10042986 pacid=23167987 polypeptide=Lus10042986 locus=Lus10042986.g ID=Lus10042986.BGIv1.0 annot-version=v1.0 ATGCCCTCCGCCGTCTCCCCACAGTGGCAAGAGAAAGCTACTGTTTTCTTTTCGACCTCAGGTGTGAAACTTAAAGAGGCTGGGCACTCAGCCGGAACAT TTGTTGGAGAAGTTGCAAATGATGCTAAAGGTAATGTTGCAGATGTTGCGGGACGTGTTGGGTCCGCGGTGAAAAGTCGGTGGGCTATTCTCAAGGAGCC ATCAACTAGGCATATCTTCCAGGAGCGACTGATAACTGCTGCTGCTACAACGGGTATGTTCTTACGAAAGGGCTTCTCTGAAACAAAGGACAAAGTTTCT GTAGGGAAGACTAAAGTTGAAGAGGTGGCCAAGAAAACTGCCCAGAAAAGTAAGACCATTTTAACGGACATTGAACGACGGCAAAAGGGAGTTGCAAGCA CTGATGTCTTTGGGGTTCCCATACAGATCACTGTACAGCGACAGCAATCTGGTAGGCCCGTGCCCAATGTTTTGGTTAATTGTGCTGATTATCTCATACA ATCGGGGTTAAACTCAGTCGACCTGTTTAAAACTGAAGGGGACAGGTTGATTGTTCGGCAACTGCTGTCAATGTTTAACCTAGATTTGAATGCATTACTG CCTGATGGTATTAATCCAATTGATGTGGCATTTCTGATGAAATGTTATCTAGCAAGTCTTCCTGAACCACTAACCACCTTTGAGCACTATGATGCAATAA AAGGTGCTCGTTCTAACGTAAATGCCATGAGAAATACCCTCAAGAGACTTCCTACTGTAAACTACATGACACTGGAGTTCATCACCGCACTTTTGCTTCG TATGGATGCTAGGAGTCTTGCTATGGAAATTGCACCTGTCGTGATGTGGCGAAAAGAGCAAAGACCAGAATCATATAGACAGCATTGGAATTCCATGTTA CAAAATACATCTAAAACAAAAACAGATGTACAACCACCTACTTACAGCGAATGGGATATTCTTTCAGACTCGACAGAAGAAGGAGAAGCAATGGAAGTGT CGTCACCGATTCCGCTGGATGACGGTGCACCTGTGGATTTCGGGGCTATAGAGGTTGTACAGTGCCTCATCGAACAACACAACTCCATTTTCACAGACGC GAATGAAACAGTTTGGAGATAG
AA sequence Show only first row Show all	>Lus10042986 pacid=23167987 polypeptide=Lus10042986 locus=Lus10042986.g ID=Lus10042986.BGIv1.0 annot-version=v1.0 MPSAVSPQWQEKATVFFSTSGVKLKEAGHSAGTFVGEVANDAKGNVADVAGRVGSAVKSRWAILKEPSTRHIFQERLITAAATTGMFLRKGFSETKDKVS VGKTKVEEVAKKTAQKSKTILTDIERRQKGVASTDVFGVPIQITVQRQQSGRPVPNVLVNCADYLIQSGLNSVDLFKTEGDRLIVRQLLSMFNLDLNALL PDGINPIDVAFLMKCYLASLPEPLTTFEHYDAIKGARSNVNAMRNTLKRLPTVNYMTLEFITALLLRMDARSLAMEIAPVVMWRKEQRPESYRQHWNSML QNTSKTKTDVQPPTYSEWDILSDSTEEGEAMEVSSPIPLDDGAPVDFGAIEVVQCLIEQHNSIFTDANETVWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61530			small G protein family protein...		Lus10042986 [exp]	0	1
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10015121 [exp]	1.4	0.8645
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10018445 [exp]	6.0	0.8533
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	9.2	0.8576
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	11.0	0.8511
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10030163 [exp]	11.0	0.8287
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	11.3	0.8422
					Lus10037807 [exp]	11.5	0.8357
AT5G35460			unknown protein		Lus10021569 [exp]	11.6	0.8545
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10021624 [exp]	13.1	0.8651
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021562 [exp]	15.1	0.7617

Compare expression of checked genes

Lus10042986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.