Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07620 433 / 2e-152 Protein kinase superfamily protein (.1) AT5G61570 389 / 8e-135 Protein kinase superfamily protein (.1.2) AT3G24660 210 / 6e-62 TMKL1 transmembrane kinase-like 1 (.1) AT3G51740 197 / 2e-56 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT4G23740 169 / 9e-47 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 166 / 1e-45 RKL1 receptor-like kinase 1 (.1) AT3G56100 165 / 3e-45 IMK3, MRLK meristematic receptor-like kinase (.1) AT2G26730 164 / 6e-45 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 162 / 2e-44 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 161 / 5e-44 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032493 [exp] 639 / 0 AT5G07620 437 / 9e-152 Protein kinase superfamily protein (.1) Lus10022818 [exp] 225 / 2e-67 AT3G24660 883 / 0.0 transmembrane kinase-like 1 (.1) Lus10011886 [exp] 213 / 8e-65 AT3G24660 649 / 0.0 transmembrane kinase-like 1 (.1) Lus10022679 [exp] 209 / 6e-61 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 206 / 5e-60 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 206 / 1e-59 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 199 / 2e-57 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012225 [exp] 194 / 3e-56 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10021383 [exp] 173 / 3e-48 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G232800 [exp] 449 / 2e-159 AT5G07620 365 / 1e-126 Protein kinase superfamily protein (.1) Potri.002G251700 [exp] 211 / 3e-62 AT3G24660 917 / 0.0 transmembrane kinase-like 1 (.1) Potri.016G126300 [exp] 212 / 8e-62 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 202 / 2e-58 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.010G183400 [exp] 198 / 1e-56 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.013G158800 [exp] 177 / 8e-50 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 174 / 8e-49 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 173 / 2e-48 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 170 / 4e-47 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 168 / 2e-46 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042988 pacid=23168176 polypeptide=Lus10042988 locus=Lus10042988.g ID=Lus10042988.BGIv1.0 annot-version=v1.0 ATGAAATTCCTCATCGGAGCAACCTCCGCTACCGCCTTGCTCATTATCTTACTTGCGATCCTCCTTTGCTTGAGAAGGTCAAGGGGAAGAAGGAAGCGGC AGCAGTATGATGTGGAAATCACAGAGCTTGATAAGAAGAAGCAGCAAGGAGGAGGAGAAGAGACAACAACTACAGCAACAGTGCCGATTGTGACTGAGGA GGATTTGGTGAGGTTCCATGGCGGCCAGGACCTTACTGTCAGCGACATTCTCGATGCACCTGGAGAAGTCATTGGCAAATCCAACTACGGCACTTTGTAC AAGGCCTTGTTGCAGAGGACCAACTGTGTTAGGCTGCTGCGGTTCTTGAGGCCCGTTTGTGCTTCAAGAGTAAAAGATTTTAATGCTACGGTTCAGCTTC TGGGCTGCCTTAGACATCCAAATTTGGTCCCTCTGCTGGGGTTTTACGCTGGTTCTAGAGGTGAAAAGCTCCTTGTTCATCCGTTTTTCAGGCGTGGCGA TTTGGCTCATTTCATTAGAGAGGGAAATGCTGAGTGTCATAAATGGACAACCATCCACAGGTTATCTATTGGTATAGCCAAGGGACTGGATCACCTTCAT ACAGGTTTACAGAAGCCTGTGATTCATGGTAATCTAAAGTCAAAGAACATTCTCCTGGATCGCAATTGCCAACCTTGCATATCAGATTTTGGACTCCATC TCCTATTAAACCCGACCGCTGGCCAAGAAATGCTCGAGACTTCCGCAGCAGAAGGATACAAAGCCCCCGAGCTTATCAAAATGAAAGATGCAAGTGAAGA GACTGATATATACGGCCTAGGAATAGTGTTGCTTGAGCTTCTCTCGGGGAAGGAGCCAGTCAATCCGAATCCTACTCCTGATGAGGATTTTTACCTTCCA ACGTTCATGAGAAACGCGATCCTTGATCGTAGAATCACGGACATTTATCATCCAGACATTCTTATTGACGGTGAGGGTGATAAGAGGGGAAACTCTGTTA CAGAAGAGAGCATATTTAAGTTCTTTCAGCTCGCAATGTCTTGCTGTTCGCCTTCTCCTTCTCTTAGACCGAACATCAAGCAAGTATTATCGAAGCTGGA AGAAATGGGAAAATGTGGGTAA
AA sequence Show only first row Show all	>Lus10042988 pacid=23168176 polypeptide=Lus10042988 locus=Lus10042988.g ID=Lus10042988.BGIv1.0 annot-version=v1.0 MKFLIGATSATALLIILLAILLCLRRSRGRRKRQQYDVEITELDKKKQQGGGEETTTTATVPIVTEEDLVRFHGGQDLTVSDILDAPGEVIGKSNYGTLY KALLQRTNCVRLLRFLRPVCASRVKDFNATVQLLGCLRHPNLVPLLGFYAGSRGEKLLVHPFFRRGDLAHFIREGNAECHKWTTIHRLSIGIAKGLDHLH TGLQKPVIHGNLKSKNILLDRNCQPCISDFGLHLLLNPTAGQEMLETSAAEGYKAPELIKMKDASEETDIYGLGIVLLELLSGKEPVNPNPTPDEDFYLP TFMRNAILDRRITDIYHPDILIDGEGDKRGNSVTEESIFKFFQLAMSCCSPSPSLRPNIKQVLSKLEEMGKCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07620			Protein kinase superfamily pro...		Lus10042988 [exp]	0	1
AT1G66830			Leucine-rich repeat protein ki...		Lus10017611 [exp]	6.9	0.8346
AT5G16730			Plant protein of unknown funct...		Lus10020373 [exp]	10.0	0.7911
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10019414 [exp]	10.6	0.7993
AT3G09010			Protein kinase superfamily pro...		Lus10004825 [exp]	14.3	0.7336
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	15.6	0.7970
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10020281 [exp]	16.4	0.7844
AT5G59990			CCT motif family protein (.1.2...		Lus10028137 [exp]	20.0	0.7859
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	22.0	0.7825
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10005705 [exp]	22.1	0.7847
AT4G24780			Pectin lyase-like superfamily ...		Lus10013666 [exp]	22.2	0.7944

Compare expression of checked genes

Lus10042988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.