Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07610 82 / 1e-18 F-box family protein (.1) AT5G15660 49 / 6e-07 F-box and associated interaction domains-containing protein (.1) AT1G20795 45 / 1e-05 F-box family protein (.1) AT3G06240 42 / 0.0001 F-box family protein (.1) AT1G20735 40 / 0.0003 F-box and associated interaction domains-containing protein (.1) AT1G20360 39 / 0.0006 F-box family protein (.1) AT1G20790 39 / 0.001 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024021 [exp] 56 / 3e-09 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10014320 [exp] 55 / 4e-09 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10041733 [exp] 54 / 9e-09 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10015048 [exp] 54 / 1e-08 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10026028 [exp] 39 / 0.0002 ND 37 / 6e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254000 [exp] 128 / 1e-35 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.013G067800 [exp] 89 / 3e-21 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.013G065500 [exp] 87 / 2e-20 AT5G07610 155 / 6e-43 F-box family protein (.1) Potri.003G215900 [exp] 86 / 8e-20 AT5G07610 101 / 2e-23 F-box family protein (.1) Potri.005G043500 [exp] 84 / 2e-19 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.018G132800 [exp] 84 / 2e-19 AT5G07610 158 / 1e-43 F-box family protein (.1) Potri.004G232700 [exp] 76 / 1e-17 AT5G07610 117 / 3e-31 F-box family protein (.1) Potri.006G071100 [exp] 63 / 7e-12 AT5G07610 52 / 4e-07 F-box family protein (.1) Potri.007G027300 [exp] 56 / 1e-09 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.005G124500 [exp] 55 / 3e-09 AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042989 pacid=23168235 polypeptide=Lus10042989 locus=Lus10042989.g ID=Lus10042989.BGIv1.0 annot-version=v1.0 ATGTGCGATCTTCCCGGGTATGGAACTGAAGACTACTTCATCTACAATCCAACAACTAATCTCTTTCTCCAGCTTCCTCGTCACACTGGGAATAATTCCA TTGCTGTGAACCTTGCCTTTGACCCTGTCAAGTCTCCTCATTACGAAATCATCTGCATCGACATCAGCCAACACGACGAGGATGCATATCAGATTTCGAT ATACTCGTCTCCAACCGGGTCCTGGAAGATTTCAGGCACCACTTTCGTTGCCCATGTTAATACACTATGGGGCAGACCTGTTTTCTGCAACGGGGCTCTT TTCTGGATCAATCCTTGGGGTCGTTGCCTGAGGTTCGACGTTGAGGAAGAAAAACTCGGAGAAATCCCAATTCTGCTTGTTCCAACCGGACGGGACAAGA GGAGGTACGTTTATTTCGGCCAGTCCGGAGGCGCTTTGCATCTCGTCAAAATCTATGCGTCCCCCACCATGCAGTTTGACGTGTACGAGATGACGATGGA CTATGATTCCGGGTGA
AA sequence Show only first row Show all	>Lus10042989 pacid=23168235 polypeptide=Lus10042989 locus=Lus10042989.g ID=Lus10042989.BGIv1.0 annot-version=v1.0 MCDLPGYGTEDYFIYNPTTNLFLQLPRHTGNNSIAVNLAFDPVKSPHYEIICIDISQHDEDAYQISIYSSPTGSWKISGTTFVAHVNTLWGRPVFCNGAL FWINPWGRCLRFDVEEEKLGEIPILLVPTGRDKRRYVYFGQSGGALHLVKIYASPTMQFDVYEMTMDYDSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07610			F-box family protein (.1)		Lus10042989 [exp]	0	1
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10029767 [exp]	14.5	0.6671
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10015868 [exp]	20.7	0.6560
					Lus10000085 [exp]	32.3	0.5788
AT2G27520			F-box and associated interacti...		Lus10004586 [exp]	35.1	0.5918
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041675 [exp]	37.6	0.5985
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10029038 [exp]	54.7	0.6089
AT1G77700			Pathogenesis-related thaumatin...		Lus10028079 [exp]	57.2	0.5808
AT1G58330		ZW2	transcription factor-related (...		Lus10028231 [exp]	70.0	0.5508
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10027823 [exp]	85.3	0.5181
					Lus10000901 [exp]	91.7	0.5203

Compare expression of checked genes

Lus10042989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.