Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51220 355 / 5e-124 ubiquinol-cytochrome C chaperone family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032494 [exp] 376 / 1e-133 AT5G51220 301 / 3e-104 ubiquinol-cytochrome C chaperone family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151600 [exp] 396 / 6e-140 AT5G51220 384 / 3e-135 ubiquinol-cytochrome C chaperone family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03981 [flax] [poplar] Ubiq_cyt_C_chap Ubiquinol-cytochrome C chaperone
Representative CDS sequence Show only first row Show all	>Lus10042991 pacid=23168154 polypeptide=Lus10042991 locus=Lus10042991.g ID=Lus10042991.BGIv1.0 annot-version=v1.0 ATGTTACAACGATGGAGCAAAGCTGTTTCTCATCTCTCCAAGGTTAGGGCGGCCACTTCAATGGAGCCGCAGCTGCTGCGGAACGATACAGCCTTTGTTC CACGCCATTGCCATTTCACCACCGCTGCTGCAACTGTTGCCCCTGCTCCTAATGATTCTCTTAACAAGAGCTCTCATGGAAAATCATTGGTAAATTTGGA CAAAATGTTCTGGTCAAAGCCGTGCTCATTAGCTTTGGCTCCTGGTTCCTCGCTCAGAGTTGAAGAGCCAAGCTATGAGGGTCTCCGCCGTGTCATATTT AAGATGCTATTGTTTTATAGCAAACAGAGCAAATCTATTCGTGGTGCCAACGTAGCATATCGGAGGATCATTCATCAAGTAGATAAGCCAGCTATATATG AAGTATTCAATTTGGAGAAGAACTTTAGAATGACGTTTTCCCTACTTGTACTTCACATGTGGCTAATCTTACGCCGACTAAAGCAAGAAGGAAAAGAAGG TTCTGAGTTTGGGCAATACATCTACGAGATTTACAACCACGATGTGGAGCTTAGAGTGTCTAAAGCAGGGGTTAATTTTTTTTTGACAAAATGGATGAAA GAGCTGGAGAAGATATTCTACGGAAACATTGTTGCTTATGATGCTGCCATACTGCCAGAGGCTAAGCCAGATGAGCTGCCAAGGGTGATATGGAGGAATG TATTTGCGGACGATGGTACATCTGAGCCAGATCAGGCTGCATCTCATGCTGCGATGACGAGGTATGTTCGTCGTGAAGTCAGTTGCTTTTCGTTAACAGA CAAAGAAGCCATGTATTCTGGGAATTTCACTTTCACATCCTTGGACAACATTCCACCATCAGTTTCTGCCAAGAAGTAA
AA sequence Show only first row Show all	>Lus10042991 pacid=23168154 polypeptide=Lus10042991 locus=Lus10042991.g ID=Lus10042991.BGIv1.0 annot-version=v1.0 MLQRWSKAVSHLSKVRAATSMEPQLLRNDTAFVPRHCHFTTAAATVAPAPNDSLNKSSHGKSLVNLDKMFWSKPCSLALAPGSSLRVEEPSYEGLRRVIF KMLLFYSKQSKSIRGANVAYRRIIHQVDKPAIYEVFNLEKNFRMTFSLLVLHMWLILRRLKQEGKEGSEFGQYIYEIYNHDVELRVSKAGVNFFLTKWMK ELEKIFYGNIVAYDAAILPEAKPDELPRVIWRNVFADDGTSEPDQAASHAAMTRYVRREVSCFSLTDKEAMYSGNFTFTSLDNIPPSVSAKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51220			ubiquinol-cytochrome C chapero...		Lus10042991 [exp]	0	1
AT1G63110			GPI transamidase subunit PIG-U...		Lus10006320 [exp]	1.0	0.8532
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10014662 [exp]	9.7	0.8288
AT1G42440			unknown protein		Lus10013232 [exp]	11.6	0.8426
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	16.4	0.8332
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	18.3	0.8116
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	22.2	0.8299
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	24.2	0.8156
AT4G23540			ARM repeat superfamily protein...		Lus10031065 [exp]	25.1	0.8074
AT1G30960			GTP-binding family protein (.1...		Lus10023046 [exp]	27.1	0.7779
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	27.7	0.7963

Compare expression of checked genes

Lus10042991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.