Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07590 811 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032495 [exp] 931 / 0 AT5G07590 812 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004893 [exp] 48 / 1e-05 AT3G44530 1389 / 0.0 homolog of histone chaperone HIRA (.1.2) Lus10020585 [exp] 48 / 1e-05 AT3G44530 1395 / 0.0 homolog of histone chaperone HIRA (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151400 [exp] 850 / 0 AT5G07590 818 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G079100 [exp] 840 / 0 AT5G07590 811 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G184900 [exp] 47 / 2e-05 AT3G44530 1365 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.009G144800 [exp] 47 / 3e-05 AT3G44530 1398 / 0.0 homolog of histone chaperone HIRA (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10042992 pacid=23168249 polypeptide=Lus10042992 locus=Lus10042992.g ID=Lus10042992.BGIv1.0 annot-version=v1.0 ATGGAGTTCACAGAGGCTTACAAGCAGACCGGGCCGTGTTGCTTCTCTCCCAATTCGAGATACATCGCCGTCGCTGTTGATTACCGGCTGGTGATACGGG ACACCTTCACATTTAAGGTCGTTCAGCTGTTTTCTTGCTTAGACAAGATAAGCTTCATAGAATGGGCGCTTGATTCTGAATACATACTTTGCGGGTTGTA TAAAAGGCCGATGATACAGGCATGGTCCTTGACCCAACCTGAGTGGACATGTAAGATAGATGAAGGTCCAGCTGGTATTGCTTATGCTAGATGGAGCCCT GACAGCCGTCACATTCTTACCACTTCCGATTTCCAGTTGCGACTAACGGTTTGGTCGTTACTGAACACGGCTTGTGTTCATGTGCAATGGCCAAAGCATG GCTCAAAGGGAGTTTGTTTCACCAAAGATGGGCAATTTGCTGCCATTTGTACCAGGCGGGATTGCAAGGATTACGTGAATCTTTTGTCATGTCAAACGTG GGAGATAATGGGTTCTTTTGCAGTTGATACCGTGGATTTGGCTGACATTGGATACTCACCTGATGATAGTGCTATTGTGATTTGGGATTCTCCTCTTGAA TATAAGGTTTTGATTTACTCCCCTGACGGTCGGTGTCTGTTCAAGTATCAAGCATATGAGAGTGGACTAGGAGTAAAAAGTGTATCCTGGTCCCCTTGTG GCCAGTTTTTAGCTGTAGGTAGTTATGATCAAATGCTGCGTGTCCTGAATCACCTGACCTGGAAAACTTTTGCTGAGTTTATGCATGTGTCTGCTGTTCG TGCTCCTTGTTGTGCTGCTGTCTTCAAGGAAGTGGACGAGCCTGTGAATCTTGACATGTCTGAATTGAGCTTAAATGATGAGTTCCTCCAAGGAAATTCT GATGTTGCAGAAGAACCTTACAGAGTTCGATACGAGGTTATGGAAGTACCTATTTCTCTACCTTTCCAAAAACCTTTGGCAGACAAGCCAAATCCCAAGC AAGGAATTGGTCTAATGTCATGGAGCAGTGACAGCCAATACGTCTGCACTCGCAACGACAGCATGCCTAGTGCACTGTGGATATGGGACATCCATCGTCT AGAGCTGGCAGCTATCTTGGTGCAGAAGGATCCCATAAAAGCAGCAGCTTGGGACCCGACATGCACCCGTTTGGTCATATGCACAGGGAGCTCTCACATG TACATGTGGTCTCCGGCTGGTGCATACTGCGTAAGTAATCCTCTGCCGAAGTTTTCCATAATGGATATGAAATGGAACTCCGATGGAAGTTGTCTTCTCC TCAAAGACAAAGAGTCGTTCTGCTGCGCCGCAATGCCTTTGTTGCCGGAATCCAGCGATTATAGCTCAGATGAGTGCTAA
AA sequence Show only first row Show all	>Lus10042992 pacid=23168249 polypeptide=Lus10042992 locus=Lus10042992.g ID=Lus10042992.BGIv1.0 annot-version=v1.0 MEFTEAYKQTGPCCFSPNSRYIAVAVDYRLVIRDTFTFKVVQLFSCLDKISFIEWALDSEYILCGLYKRPMIQAWSLTQPEWTCKIDEGPAGIAYARWSP DSRHILTTSDFQLRLTVWSLLNTACVHVQWPKHGSKGVCFTKDGQFAAICTRRDCKDYVNLLSCQTWEIMGSFAVDTVDLADIGYSPDDSAIVIWDSPLE YKVLIYSPDGRCLFKYQAYESGLGVKSVSWSPCGQFLAVGSYDQMLRVLNHLTWKTFAEFMHVSAVRAPCCAAVFKEVDEPVNLDMSELSLNDEFLQGNS DVAEEPYRVRYEVMEVPISLPFQKPLADKPNPKQGIGLMSWSSDSQYVCTRNDSMPSALWIWDIHRLELAAILVQKDPIKAAAWDPTCTRLVICTGSSHM YMWSPAGAYCVSNPLPKFSIMDMKWNSDGSCLLLKDKESFCCAAMPLLPESSDYSSDEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07590			Transducin/WD40 repeat-like su...		Lus10042992 [exp]	0	1
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008929 [exp]	2.0	0.8314
AT3G21400			unknown protein		Lus10006520 [exp]	3.0	0.8449
AT5G45770		AtRLP55	receptor like protein 55 (.1)		Lus10039985 [exp]	6.7	0.8045
AT4G14930			Survival protein SurE-like pho...		Lus10004909 [exp]	14.7	0.8190
AT5G67280		RLK	receptor-like kinase (.1)		Lus10019816 [exp]	14.8	0.7718
AT3G21400			unknown protein		Lus10037507 [exp]	16.3	0.8210
AT1G63850			BTB/POZ domain-containing prot...		Lus10017511 [exp]	26.7	0.8072
AT3G52610			unknown protein		Lus10022699 [exp]	27.2	0.7533
AT1G51160			SNARE-like superfamily protein...		Lus10027541 [exp]	27.3	0.8203
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10029924 [exp]	29.8	0.8160

Compare expression of checked genes

Lus10042992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.