Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G25770 353 / 1e-119 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G10040 318 / 4e-106 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29120 267 / 2e-85 Hydrolase-like protein family (.1.2.3.4.5) AT1G58350 46 / 3e-05 ZW18 Putative serine esterase family protein (.1.2.3) AT1G09980 45 / 6e-05 Putative serine esterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032496 [exp] 709 / 0 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10006982 [exp] 313 / 3e-104 AT4G25770 432 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001320 [exp] 299 / 2e-99 AT4G25770 436 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013909 [exp] 258 / 4e-82 AT1G29120 561 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10001893 [exp] 246 / 2e-77 AT1G29120 558 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10038351 [exp] 47 / 2e-05 AT1G09980 1025 / 0.0 Putative serine esterase family protein (.1.2) Lus10036214 [exp] 46 / 5e-05 AT1G58350 640 / 0.0 Putative serine esterase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151300 [exp] 562 / 0 AT5G51180 541 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G079400 [exp] 559 / 0 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G096035 [exp] 337 / 4e-113 AT4G25770 502 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G113000 [exp] 300 / 2e-98 AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G065700 [exp] 251 / 3e-79 AT1G29120 580 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Potri.019G077700 [exp] 47 / 1e-05 AT1G58350 1036 / 0.0 Putative serine esterase family protein (.1.2.3) Potri.013G104400 [exp] 47 / 2e-05 AT1G58350 1027 / 0.0 Putative serine esterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05057 [flax] [poplar] DUF676 Putative serine esterase (DUF676)
Representative CDS sequence Show only first row Show all	>Lus10042993 pacid=23168180 polypeptide=Lus10042993 locus=Lus10042993.g ID=Lus10042993.BGIv1.0 annot-version=v1.0 ATGGAGAACGCCAATGGAACCGTGGAAAACGCAGTCTGCTCGTCGGAGTCGGTTAACGGGAGCCGTGATGTCTGGAGCTGTAACGACTCTGACTCTTCTA CAGCTGATCATCTGGTTATCATGGTCCACGGCATCCTTGGCAGCTCCAGTGATTGGAAGTATGGAGCTGAGCAGTTTGTTAGAAATCTTCCGGATAAAGT CTTTGTCCATTGTAGTGAACGGAACATGTCTAGGCTGACTCTCGATGGAGTAGATGTGATGGGCGAACGATTGGCTCAAGAGGTCCTTGAAGTCATTGCG AAAAAGCCTAATTTACGTAAGATATCGTTTGTTGCACATTCAGTGGGAGGACTAGTGGCAAGGTACTGTATTGGGAAATTGTATAGCCCCCCTAGAGTAG AAAATGCAGAGGGTCCAAATGAAGAAGAGTTGGATTCGACAATAGGTGGCCTGGAGGCTGTCAATTTCATAACTGTTGCTACCCCTCACCTTGGTTCTAG GGGCAATAAGCAGGTACCATTTCTTTTTGGCCTAAATGCCTTGGAGAAAACTGCAGGTCTTGTTATTCATTGGATATTTAGGAGAACGGGTCAACATCTT TTTCTCGTTGACAACGATGAGGGAAAACCTCCATTAGTTAAACGGATGATAGAAGATTATGGTGATTTATACTTCATGTCTGCACTACGGGCATTCAAAC GTAGGGTAGCCTACTCAAATGTGGGCTATGACCGTATCCTTTTCATTCTGCTACAGTATGATTACCACTCTGATTCTGTAGAGCTTTTGCTTGTTTCTTT GACAAAATTCAATACAGATATCGTAGGGTGGAGAACATCATCGATCAGGCGGAATAACGAACTTCCAAAGTGGGAGGATTGTTTGAATGAGAAATATCCA CATGTAGTTCATGAAGAACATTGCAAAGCCAGTGACACTGACCAGGCTGATCTCTTCTCAACAGAAGCAGATAAACCAGACAAGATAGAAGAGGAGCTAG TAGCAGGTTTGTCACGTGTGTCATGGGAAAAAGTAGATGTCAGCTTTCACTCTAGCAGTCAGAGATTTGCTGCTCATAGTCATATTCAGGTGAAAGACGA GAGCATGCACAGAGAAGGGGCAGATGTGGTACAGCATATGATAGACCATTTTGTCCTGTAA
AA sequence Show only first row Show all	>Lus10042993 pacid=23168180 polypeptide=Lus10042993 locus=Lus10042993.g ID=Lus10042993.BGIv1.0 annot-version=v1.0 MENANGTVENAVCSSESVNGSRDVWSCNDSDSSTADHLVIMVHGILGSSSDWKYGAEQFVRNLPDKVFVHCSERNMSRLTLDGVDVMGERLAQEVLEVIA KKPNLRKISFVAHSVGGLVARYCIGKLYSPPRVENAEGPNEEELDSTIGGLEAVNFITVATPHLGSRGNKQVPFLFGLNALEKTAGLVIHWIFRRTGQHL FLVDNDEGKPPLVKRMIEDYGDLYFMSALRAFKRRVAYSNVGYDRILFILLQYDYHSDSVELLLVSLTKFNTDIVGWRTSSIRRNNELPKWEDCLNEKYP HVVHEEHCKASDTDQADLFSTEADKPDKIEEELVAGLSRVSWEKVDVSFHSSSQRFAAHSHIQVKDESMHREGADVVQHMIDHFVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10042993 [exp]	0	1
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10032496 [exp]	1.0	0.7340
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	5.7	0.6932
AT3G07550			RNI-like superfamily protein (...		Lus10041087 [exp]	8.3	0.6781
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	25.4	0.6632
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004802 [exp]	25.5	0.6471
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	25.8	0.6080
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	29.3	0.6772
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	31.9	0.6576
AT2G19710			Regulator of Vps4 activity in ...		Lus10040542 [exp]	35.9	0.6108
AT1G11340			S-locus lectin protein kinase ...		Lus10013246 [exp]	36.5	0.6298

Compare expression of checked genes

Lus10042993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.