Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) AT3G30280 182 / 2e-52 HXXXD-type acyl-transferase family protein (.1) AT5G47950 176 / 2e-50 HXXXD-type acyl-transferase family protein (.1) AT4G15390 165 / 4e-46 HXXXD-type acyl-transferase family protein (.1) AT5G23970 151 / 5e-41 HXXXD-type acyl-transferase family protein (.1) AT1G24430 146 / 3e-39 HXXXD-type acyl-transferase family protein (.1) AT1G24420 144 / 2e-38 HXXXD-type acyl-transferase family protein (.1) AT5G47980 122 / 1e-30 HXXXD-type acyl-transferase family protein (.1) AT4G15400 114 / 2e-27 HXXXD-type acyl-transferase family protein (.1) AT5G41040 79 / 1e-15 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016353 [exp] 530 / 0 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 424 / 5e-146 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 397 / 3e-135 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 390 / 6e-133 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 374 / 2e-126 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10036126 [exp] 271 / 6e-86 AT3G26040 189 / 6e-55 HXXXD-type acyl-transferase family protein (.1) Lus10036077 [exp] 267 / 2e-84 AT1G24420 188 / 2e-54 HXXXD-type acyl-transferase family protein (.1) Lus10025867 [exp] 244 / 5e-77 AT3G26040 155 / 2e-43 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 244 / 8e-76 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124268 [exp] 263 / 2e-83 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 263 / 2e-83 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 255 / 3e-80 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 253 / 1e-79 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 253 / 1e-79 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 253 / 3e-79 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 237 / 5e-73 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 224 / 2e-68 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 219 / 2e-66 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 213 / 4e-64 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10042994 pacid=23168380 polypeptide=Lus10042994 locus=Lus10042994.g ID=Lus10042994.BGIv1.0 annot-version=v1.0 ATGGAGATGTCAATCATCTCAGTAGATAATATCAAGCCATTTTCAGCACCAAATGATCTGCAGCCATTTAAGTTGAACCGGATTGACCAGATCATGCCCT GTTCATACACTCCTCTCATCCACTTCTATCCGAATCCCGGCCATAATAAATCAGTAACTGCTGAGCTCAAAGCCTCGCTCTCAAAGACACTAGATCTGTT TTACCCACTATCCGGGCGGGTGAACGAGGCAAACACGACGGTCCACAACTTCCATCAAGGAGTCCCATTCATAGAAGCTAGAATCCGAGGCCAAGACCTA GTTGATTTCCTGCAACCACCAAAACTGCAACTCCTCCATAACCTTGTCCCCTTGGAGCCTTTGTCTATTGGCAACTTAACAGATGGCCCCCAGATTGCCG TGCAGCTCAACACATTTGACTGCGGCGGGATTGCCCTTGGCTTCAGTTTGAGCCATAAACTCATAGATGGTGGCACTTTCAGCGTATTCCTCAAGACATG GGCGGCTTACTTAATTAATCAGGATGTTATATATTTTGATCATGCTCCAGATTTATTCAGCGGATCCTCTGTTTTCCATCCTCGACAGAGTAATGAATCC CACCACAAGATCCCGAATTTGTTAAAATGGAGCACGAGGAGATTCGTGTTCGATAAAAGTGCCATATCAGCATTGAGAATGAGCACAAGTAGTGCTCAAG TCGAGCATCCAAGTAAAGCCGAAGCTCTATCTGCTTTCATTTGGAAGCATTCCATGCTGACAGCTGCTGCTGCTGTTTCAGGACCTTCGAAACTCCGGAA TTTTACTCAACCGATTAATATGAGGTTGGTAATGGGTCGACGCTTATCCAAACGCTCCATTGGGAATTTGCTATACCCATTAACAGTTTCCTGCAAGGAT AAGGATATCCCCGACGAGAAGGAGATGGTGGCCGCTATAAGGAAAGGTATTATGAGAACTCATGACCACAAAGAGGATTTTTTTAATTCCATCTCCATTG AACAACAATTTGCAGCAAATGTTACCAGTGATGATCAACAACAGCTTCTCACTTGTTCAAGCTGGTTAGGGTTTGGATTCAGTGACTTCGAATTCGGGTT AGGAAAGCCCGTTTGGACTGCACTGGCTGGAGATAGCAATGAAAATAGCGATGCTTCTGTGAGAAATTGCCTTGTCATTCTCAAGGAAGCAGGTGCTCGA AATAGTAGTAACAACGGAATTGAGGCATGGATAACGCTTCCTCACGATGTTATGGCTGCTCTCGAAATCAATTCCGACTTCTTCAAATTTGCATCTCCCA ATCCCTCTATCACCTTCAACTAA
AA sequence Show only first row Show all	>Lus10042994 pacid=23168380 polypeptide=Lus10042994 locus=Lus10042994.g ID=Lus10042994.BGIv1.0 annot-version=v1.0 MEMSIISVDNIKPFSAPNDLQPFKLNRIDQIMPCSYTPLIHFYPNPGHNKSVTAELKASLSKTLDLFYPLSGRVNEANTTVHNFHQGVPFIEARIRGQDL VDFLQPPKLQLLHNLVPLEPLSIGNLTDGPQIAVQLNTFDCGGIALGFSLSHKLIDGGTFSVFLKTWAAYLINQDVIYFDHAPDLFSGSSVFHPRQSNES HHKIPNLLKWSTRRFVFDKSAISALRMSTSSAQVEHPSKAEALSAFIWKHSMLTAAAAVSGPSKLRNFTQPINMRLVMGRRLSKRSIGNLLYPLTVSCKD KDIPDEKEMVAAIRKGIMRTHDHKEDFFNSISIEQQFAANVTSDDQQQLLTCSSWLGFGFSDFEFGLGKPVWTALAGDSNENSDASVRNCLVILKEAGAR NSSNNGIEAWITLPHDVMAALEINSDFFKFASPNPSITFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042994 [exp]	0	1
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10037157 [exp]	2.8	0.8753
					Lus10000768 [exp]	3.0	0.8554
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10009958 [exp]	4.0	0.8579
AT1G14740			Protein of unknown function (D...		Lus10013248 [exp]	5.3	0.8423
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10026286 [exp]	5.7	0.8224
AT2G15220			Plant basic secretory protein ...		Lus10014106 [exp]	6.0	0.8200
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10005589 [exp]	6.8	0.8326
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	10.0	0.8781
AT5G04910			unknown protein		Lus10028878 [exp]	10.5	0.8641
AT1G47710			Serine protease inhibitor (SER...		Lus10034362 [exp]	12.2	0.8525

Compare expression of checked genes

Lus10042994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.