Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51230 678 / 0 C2H2ZnF AtEMF2, CYR1, VEF2, EMF2 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3) AT4G16845 246 / 1e-74 VRN2 REDUCED VERNALIZATION RESPONSE 2, VEFS-Box of polycomb protein (.1.2) AT2G35670 110 / 6e-25 FIE2, FIS2 FERTILIZATION INDEPENDENT SEED 2, FERTILIZATION-INDEPENDENT ENDOSPERM 2, VEFS-Box of polycomb protein (.1) AT4G16810 98 / 3e-22 VEFS-Box of polycomb protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032500 [exp] 1155 / 0 AT5G51230 733 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G150450 [exp] 757 / 0 AT5G51230 707 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3) Potri.001G080200 [exp] 747 / 0 AT5G51230 703 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3) Potri.003G081400 [exp] 340 / 2e-110 AT4G16845 390 / 2e-133 REDUCED VERNALIZATION RESPONSE 2, VEFS-Box of polycomb protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09733 [flax] [poplar] VEFS-Box VEFS-Box of polycomb protein
Representative CDS sequence Show only first row Show all	>Lus10042997 pacid=23167921 polypeptide=Lus10042997 locus=Lus10042997.g ID=Lus10042997.BGIv1.0 annot-version=v1.0 ATGCCAGGAATCCCTTTGGTGGTTCGTGAAACTTCATCGCATAGCCGAAGTGCGGATCAGATGTGCCGTGATGATGGTCGTGTGCGATTGTCTGCTGAAG AGGAAATGGCAGCTGAGGAAAGTCTCTCCACTTATTGTAAGCCCGTCGAGCTTTATAACATCCTCCAACGCCGGGCTGTCGCCAATCCATTGTTTCTACA GAGGTGTTTGGAGTACAAGATACAGGCGAAAAATAAAAGGAGAATTCAAATGACAGTTTCATTGTCGACGGTTACTAATGGTGGCTCTCAATCTTCTAGC CCATTTCCTCTATACATTTTGTTGGCAAGACTAGTAACCGAGTCTCTGACTCCAGAGCATTCTGCAGTTTTCCGCTTTAGCCGAGCATGCATTTTGAATA ACTTTGCTGGAGTTCAAGGGAGTATGCAAGGACAAGCAAATTTCTTACTTCCAGAATCTAATAAGTTAGCATCGGAAGCCAATGGAGGGTCACTGTCTCT CTTGCTTGTCAGCTTTGCTGGAGCTCAGAATTCTGCACATGGACTTGAATTAACAAAGAGTCATGTAGAAAATGTTGGAGGATGTTGCTTACTCGGCAAG ATACAATTGGAGTCGCTCTATGCTTCGTGGGAGAAGTCTCCTAACTTAGCATGGGGACAAAGAGTAGAGGTTGCATCAGCTGTAGATATGTATTCATGCT TCTTAAAGTTGAATTATTCGAATGCTGATAAAATTTTATTCGTACAAATTCCAAAAGGTTCAGAGAATGATGCATCACACGTGCAAGTCAATGTATTTGC GGAAGAAGTTGGAGCCGGGGAGAAATCTCGCTATCATTCATACACATGCAGTGATGTTTCTTCTTCCTCATTGTCTCATATTATTAGGTTGAGGGCTGGA AATGTTGTTTTCAATTATAGGTATTACAATAATAAGTTGCAGAAGACTGAATGTAGTGCTTATGTTTCTCTAACTGAAGACTTTACTTGTCCATTTTGCT TGATAAAATGTGGAAGCTTTAAGGGTTTGAGATATCATTTGCCGGCCTCCCATGATCTCTTCAACTTTGAGTTTTGGGTAACTGAGGAATTCCAAGCGGT AAACATATCTGTTAAAACAGATGTTTGGAGACCTGAGGTTGTTGCTCGTGGTGTTGATCCAAAGCAACAAACTTTTTCCTTTTGTTCAAAAAAAACCAGG CGCAGAAAACCGAAAAACGTCGTTCAACAAGTAAAGCATGTCTATCCTTTGATCTTCGAGTCAAACCACCATGCTGCAGCATGTGGCTTTCATGATAAGG CTAATGGTGGCAAGAAATTGGCGAACATAAGTGTTGGTGCTGCACAATGCATAGGGAAAGTTTCTTCTCTCTTCGACGAAATAGGGGCTTCACGTTCTGG TGCACAAGCCCATCCAGATCCTGAATGTGTCCAGTCAGCAAACGATAACAATCTGATTCCTCCAGCCATGTTGCAATTCTCGAAAACCAAGAAGTTAGCT GTCGAGCGTTCTGATATTAAAAACCGCAGCCTTCTTCACAAACGACGATTTTTCCACTCACATAGAGCTCAGCCTATGGCGATCGAGCAAGTCTTATCGG ATGTAGATAGTGAGGATGAAGTCGACGACGATGTTGCAGATTTAGAAGATCGAAGGATGCTCGATGATTTTGTCGATGTGACCCAGGACGAGAAACGCAT AATGCACTTGTGGAACTCCTTTGTGAGAAAGCACAGGGTCCGGGCAGACGGGCATATCCCATGGGCGTGCGAGGCATTCACCAGGTTTCATTCGAAGACG CTCTTAGAAGATCCACCCCTCCTTTGTGTCTGGAGACTGTTGATGGTGAAGCTGTGGAATCACGGGCTATTGGATCCACGTAGCATCAACAATTCCAACT TGATTCTGGAGGAAATTCATAAGGAGGAGTTGGAAGCAGGGGAAAGACTAGTTTAA
AA sequence Show only first row Show all	>Lus10042997 pacid=23167921 polypeptide=Lus10042997 locus=Lus10042997.g ID=Lus10042997.BGIv1.0 annot-version=v1.0 MPGIPLVVRETSSHSRSADQMCRDDGRVRLSAEEEMAAEESLSTYCKPVELYNILQRRAVANPLFLQRCLEYKIQAKNKRRIQMTVSLSTVTNGGSQSSS PFPLYILLARLVTESLTPEHSAVFRFSRACILNNFAGVQGSMQGQANFLLPESNKLASEANGGSLSLLLVSFAGAQNSAHGLELTKSHVENVGGCCLLGK IQLESLYASWEKSPNLAWGQRVEVASAVDMYSCFLKLNYSNADKILFVQIPKGSENDASHVQVNVFAEEVGAGEKSRYHSYTCSDVSSSSLSHIIRLRAG NVVFNYRYYNNKLQKTECSAYVSLTEDFTCPFCLIKCGSFKGLRYHLPASHDLFNFEFWVTEEFQAVNISVKTDVWRPEVVARGVDPKQQTFSFCSKKTR RRKPKNVVQQVKHVYPLIFESNHHAAACGFHDKANGGKKLANISVGAAQCIGKVSSLFDEIGASRSGAQAHPDPECVQSANDNNLIPPAMLQFSKTKKLA VERSDIKNRSLLHKRRFFHSHRAQPMAIEQVLSDVDSEDEVDDDVADLEDRRMLDDFVDVTQDEKRIMHLWNSFVRKHRVRADGHIPWACEAFTRFHSKT LLEDPPLLCVWRLLMVKLWNHGLLDPRSINNSNLILEEIHKEELEAGERLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10042997 [exp]	0	1
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	7.1	0.8596
AT4G36980			unknown protein		Lus10009350 [exp]	7.3	0.8535
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10032500 [exp]	9.3	0.8054
AT5G44090			Calcium-binding EF-hand family...		Lus10003628 [exp]	10.9	0.8708
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	14.4	0.8509
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10006271 [exp]	15.2	0.8477
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10025019 [exp]	16.6	0.7951
AT1G51610			Cation efflux family protein (...		Lus10033367 [exp]	16.8	0.7948
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	19.0	0.8475
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10036018 [exp]	19.7	0.8368

Compare expression of checked genes

Lus10042997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.