Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25130 333 / 3e-116 PMSR4 peptide met sulfoxide reductase 4 (.1) AT5G61640 315 / 9e-110 PMSR1, ATMSRA1 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) AT5G07470 307 / 1e-106 PMSR3, ATMSRA3 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) AT5G07460 287 / 1e-98 PMSR2, ATMSRA2 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, peptidemethionine sulfoxide reductase 2 (.1) AT2G18030 110 / 9e-29 Peptide methionine sulfoxide reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032504 [exp] 466 / 2e-168 AT4G25130 348 / 6e-122 peptide met sulfoxide reductase 4 (.1) Lus10033039 [exp] 262 / 5e-89 AT5G61640 256 / 6e-88 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Lus10013673 [exp] 188 / 3e-60 AT5G07470 185 / 4e-60 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) Lus10041922 [exp] 100 / 8e-25 AT2G18030 370 / 9e-131 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10028467 [exp] 99 / 2e-24 AT2G18030 364 / 1e-128 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10019755 [exp] 89 / 9e-20 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G115800 [exp] 354 / 3e-124 AT4G25130 351 / 3e-123 peptide met sulfoxide reductase 4 (.1) Potri.015G112268 [exp] 353 / 8e-124 AT4G25130 351 / 4e-123 peptide met sulfoxide reductase 4 (.1) Potri.015G087600 [exp] 263 / 1e-89 AT5G61640 261 / 8e-90 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.012G091100 [exp] 255 / 3e-86 AT5G61640 251 / 9e-86 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.007G012900 [exp] 112 / 1e-29 AT2G18030 361 / 2e-127 Peptide methionine sulfoxide reductase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01625 [flax] [poplar] PMSR Peptide methionine sulfoxide reductase
Representative CDS sequence Show only first row Show all	>Lus10043002 pacid=23167952 polypeptide=Lus10043002 locus=Lus10043002.g ID=Lus10043002.BGIv1.0 annot-version=v1.0 ATGCTCCAAAGAGTATCATCCATCTCCACCGTCTCGCGGCAGGTTCTCTGCTTCTCCGCCTCCGCAGCATCTTCTTCTTCTTCTTCTTCCTCTTCCTCCT CCAATCCATTCCTCTCTCCTTTCCCCAAAAACCTCCAACAACACTCCCTCTCCAAACCCTTAATCTCCCGTCCTCGACTGTCCAAGCCCATGAACATCCT CAACAAACTCGGCTTCGGTTTCATGTCGTCGCCGGACTCCTCCTCCATGGACCCGACGATTCCGCAGAGCCCAGACGACGACGTCCCCTCCGCCGGACAG CAGTTCGCCCAATTCGGAGCCGGGTGCTTCTGGGGAGTGGAATTGGCTTTTCAGAGAGTCCCCGGCGTTACCAAGACGGAAGTCGGGTATACACAGGGTC TGCTTCATAATCCTAGCTACCAGGATATCTGTACTGGTACTACCAGCCATTCGGAGGTTGTTAGGGTTCAGTTTGATCCCAAGGAGTGTAGCTACGACTC TCTGCTTGATGTCTTCTGGGCTAGGCATGACCCCACTACGCTCAATCGCCAGGGAAATGACGTGGGAACACAGTACAGATCCGGGATATACTATTACACC CCGGAACAGGAGGAAGCTGCAAAGGCGTCAAAGGAACGACATCAGAAGCTCTACAATCGGAACGTTGTGACTGAAATTTTGCCAGCCAAGAAGTTCTACC GAGCTGAAGAGTACCACCAGCAGTACCTTGCTAAAGGCGGCCGTATGGGTTTGAAGCAGTCTGCTGAGAAGGGCTGTAATGATCCGATCAGATGCTATGG CTAA
AA sequence Show only first row Show all	>Lus10043002 pacid=23167952 polypeptide=Lus10043002 locus=Lus10043002.g ID=Lus10043002.BGIv1.0 annot-version=v1.0 MLQRVSSISTVSRQVLCFSASAASSSSSSSSSSSNPFLSPFPKNLQQHSLSKPLISRPRLSKPMNILNKLGFGFMSSPDSSSMDPTIPQSPDDDVPSAGQ QFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPSYQDICTGTTSHSEVVRVQFDPKECSYDSLLDVFWARHDPTTLNRQGNDVGTQYRSGIYYYT PEQEEAAKASKERHQKLYNRNVVTEILPAKKFYRAEEYHQQYLAKGGRMGLKQSAEKGCNDPIRCYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10043002 [exp]	0	1
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10012501 [exp]	4.2	0.8184
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10002486 [exp]	6.0	0.7890
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	8.2	0.8225
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10006092 [exp]	9.2	0.7614
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10043095 [exp]	9.5	0.7889
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10018852 [exp]	13.2	0.8177
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	16.7	0.8131
AT5G43850		ATARD4	RmlC-like cupins superfamily p...		Lus10021902 [exp]	17.0	0.8055
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039506 [exp]	19.3	0.7741
AT4G13200			unknown protein		Lus10011869 [exp]	21.0	0.7868

Compare expression of checked genes

Lus10043002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.