Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44740 218 / 8e-72 CYCP4;1 cyclin p4;1 (.1) AT5G61650 208 / 9e-68 CYCP4;2 CYCLIN P4;2 (.1) AT5G07450 192 / 1e-61 CYCP4;3 cyclin p4;3 (.1) AT3G63120 142 / 8e-42 CYCP1;1 cyclin p1;1 (.1) AT3G21870 140 / 3e-41 CYCP2;1 cyclin p2;1 (.1) AT3G05327 135 / 3e-39 Cyclin family protein (.1) AT2G45080 134 / 7e-39 CYCP3;1 cyclin p3;1 (.1) AT3G60550 131 / 1e-37 CYCP3;2 cyclin p3;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032505 [exp] 339 / 3e-119 AT2G44740 228 / 7e-76 cyclin p4;1 (.1) Lus10022038 [exp] 164 / 3e-50 AT3G63120 197 / 8e-64 cyclin p1;1 (.1) Lus10039697 [exp] 160 / 1e-48 AT3G21870 236 / 3e-79 cyclin p2;1 (.1) Lus10042582 [exp] 159 / 2e-48 AT3G63120 191 / 2e-61 cyclin p1;1 (.1) Lus10027148 [exp] 159 / 1e-47 AT3G21870 233 / 6e-77 cyclin p2;1 (.1) Lus10004475 [exp] 154 / 7e-47 AT3G05327 171 / 1e-53 Cyclin family protein (.1) Lus10029933 [exp] 153 / 2e-46 AT3G05327 172 / 3e-54 Cyclin family protein (.1) Lus10042873 [exp] 139 / 2e-40 AT3G60550 300 / 8e-104 cyclin p3;2 (.1) Lus10028174 [exp] 135 / 1e-39 AT2G45080 249 / 1e-84 cyclin p3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G050400 [exp] 240 / 1e-80 AT2G44740 285 / 8e-99 cyclin p4;1 (.1) Potri.012G114600 [exp] 234 / 4e-78 AT2G44740 277 / 2e-95 cyclin p4;1 (.1) Potri.015G112140 [exp] 231 / 3e-77 AT2G44740 274 / 1e-94 cyclin p4;1 (.1) Potri.002G052800 [exp] 168 / 1e-51 AT3G63120 219 / 1e-71 cyclin p1;1 (.1) Potri.005G209800 [exp] 164 / 1e-50 AT3G63120 223 / 7e-74 cyclin p1;1 (.1) Potri.007G121500 [exp] 160 / 9e-49 AT3G21870 228 / 5e-76 cyclin p2;1 (.1) Potri.013G023000 [exp] 145 / 2e-43 AT3G05327 194 / 4e-63 Cyclin family protein (.1) Potri.005G033600 [exp] 140 / 1e-41 AT3G05327 184 / 5e-59 Cyclin family protein (.1) Potri.014G066400 [exp] 135 / 3e-39 AT3G60550 343 / 3e-121 cyclin p3;2 (.1) Potri.002G143400 [exp] 134 / 6e-39 AT2G45080 324 / 1e-113 cyclin p3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF08613 [flax] [poplar] Cyclin Cyclin
Representative CDS sequence Show only first row Show all	>Lus10043003 pacid=23168156 polypeptide=Lus10043003 locus=Lus10043003.g ID=Lus10043003.BGIv1.0 annot-version=v1.0 ATGGCTGGAAGAGATCTGGATGAGAGATGTCCGCCGCCGACGCCCAAAGTGATAAGGTTCTTGTCTTGTCTGCTTCAGCGAGTGGCTGATTCCAATGATT TAAGAATGAAAAGCCAATTTGGCGGCTCTTCTTCTTCTTCTTCTTCCGCCGCAATTTCCTCCATCTTCCACGGTCTGACACCGCCGTCAATTTCCATCCA CAGCTACCTCGACAGGATCTTCAGCTACGCCAATTGCAGTCCTTCTTGCTTTGTGGTCGCGTACGTCTATCTGGATCGGTTCGTTCAGAAGCAGCCGTCT CTTCCCATCACTTCTCTCAATGTTCATCGCCTCCTCATTACCAGCGTCTTGGTCTCCGTCAAGTTCATGGACGACATATACTACAATAATGCGTACTACG CAAAAGTAGGAGGGATCAGCAGAGCAGAGATGAATATGATGGAAGTGGATTTCCTATTCGGGATAGGATTCGATTTAAACGTGACTCCCACCACTTTCCA CACTTACTGCTCTCACCTCAACACCCTCCAGATGCCATTTCTCCAACCTCCTCCTAATAATTTACACCTTCTCCTACATCCAACTCCCGATAACAACATG CAGCCTACCACATCAGCCGCCGCCGCCAGATCCTCATCGAAGCAGCAGCAGCAGCTTCTACACCATTGTTGCCACAATGAAGACGACTCAACCCGCCATC AACAGCTTGCCGTTTGA
AA sequence Show only first row Show all	>Lus10043003 pacid=23168156 polypeptide=Lus10043003 locus=Lus10043003.g ID=Lus10043003.BGIv1.0 annot-version=v1.0 MAGRDLDERCPPPTPKVIRFLSCLLQRVADSNDLRMKSQFGGSSSSSSSAAISSIFHGLTPPSISIHSYLDRIFSYANCSPSCFVVAYVYLDRFVQKQPS LPITSLNVHRLLITSVLVSVKFMDDIYYNNAYYAKVGGISRAEMNMMEVDFLFGIGFDLNVTPTTFHTYCSHLNTLQMPFLQPPPNNLHLLLHPTPDNNM QPTTSAAAARSSSKQQQQLLHHCCHNEDDSTRHQQLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	0	1
AT1G76240			Arabidopsis protein of unknown...		Lus10016005 [exp]	1.0	0.9769
AT3G16850			Pectin lyase-like superfamily ...		Lus10016837 [exp]	2.0	0.9697
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10032505 [exp]	2.2	0.9569
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	3.5	0.9649
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	3.5	0.9637
AT1G63850			BTB/POZ domain-containing prot...		Lus10028772 [exp]	4.5	0.9393
AT4G36750			Quinone reductase family prote...		Lus10040486 [exp]	5.1	0.9270
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10014262 [exp]	7.9	0.9493
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	8.0	0.9506
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10027679 [exp]	8.8	0.9460

Compare expression of checked genes

Lus10043003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.