Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G40087 47 / 1e-05 Plant transposase (Ptta/En/Spm family) (.1) AT3G30200 43 / 0.0003 Plant transposase (Ptta/En/Spm family) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012388 [exp] 140 / 1e-40 ND / Lus10019613 [exp] 137 / 1e-39 ND / Lus10005472 [exp] 132 / 6e-38 ND / Lus10006476 [exp] 121 / 4e-33 ND / Lus10005607 [exp] 120 / 2e-32 ND 38 / 0.003 Lus10022156 [exp] 119 / 8e-32 ND / Lus10005026 [exp] 105 / 3e-27 ND / Lus10017842 [exp] 99 / 3e-25 ND / Lus10010602 [exp] 92 / 1e-22 ND 35 / 0.010
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043004 pacid=23168289 polypeptide=Lus10043004 locus=Lus10043004.g ID=Lus10043004.BGIv1.0 annot-version=v1.0 ATGGATCATCCCATGGCTCAGACCACCAGTTCATCTGGCTCGTTCCACGGACCCAACTGGGATTTCAGTGGGGGTCGGGCTCTACTCCAAGTACTGGTTG GAGATATGGATCTGGATCAGCTCGAACCCCTAACGGGTTCGCGTGGGGCTCTGGCTACGAAACTAGACCCGGGCCCGGATCAGGCTATGGGTATAGTTAC GGGCCTGGTGGGGGTGTTCGTGCGGATGGGTATGGCGCTGGAAGTGGGGGCTCCGGAGGTCCGCCTGTTGACAGAAACCACCATGGCTGAGGTGTGGAGG AGTCGGCAGTTTGGCTTGAATCGGATCGTAATTGAACTGGATATAACATTTGAGGATGCTAAAAAGTACATAATGGGTGACATCGCGAAGAAGTGGAGAG ACTACCGAGTCCGGATGTGGAAAGACCAAGTGTTGAAGAATAAAAACATCTCAAAACCACTCTCTGCACAAGCTTCTAGAGCTGCTTGCATTGCAGCCAA GCCTGACCAGATTCCAGGACCAATGTGGACACAATTTATGGACTATAAGCTGAGACCAGAAGTTCTGAGGGAAAGAACCGGTCAAACATCGAGTAGGGGT GAGTTGTATGCTCAAACTCATACGAAGAAATCTGAGAAATATATCGATCTACAAGTGCCTGAGATTATGACATTTGACAATACCATTGGAGTTCCCAAAC ATGTTGCCCCTAATGATTCGTTTGGCCGTGTCAAAGGAGTTGAGTATAGTGGCCGAGTGCGAGGAGTAAGATATGGAGTAACTCCTTCTCAAGTTGGACT AAGTAGGACGGGTAAAGGCATTGGACAGTCTAGTGCAGACGATAGTCAATCACATTCTCATCTTCTAGGATATTGTCCTACCGCATCTGAGGCATTAGAT CGTGTCCAACCTTTGGAAGAAGAAATCCGCATGATGAGGGAAGAAATGACACGAGGGAAGCAACAAGTGCAAGAAGATAAAGAGGAACAAGAAGACAAGG AGGAAGATGATTATGATAACTATTAA
AA sequence Show only first row Show all	>Lus10043004 pacid=23168289 polypeptide=Lus10043004 locus=Lus10043004.g ID=Lus10043004.BGIv1.0 annot-version=v1.0 MDHPMAQTTSSSGSFHGPNWDFSGGRALLQVLVGDMDLDQLEPLTGSRGALATKLDPGPDQAMGIVTGLVGVFVRMGMALEVGAPEVRLLTETTMAEVWR SRQFGLNRIVIELDITFEDAKKYIMGDIAKKWRDYRVRMWKDQVLKNKNISKPLSAQASRAACIAAKPDQIPGPMWTQFMDYKLRPEVLRERTGQTSSRG ELYAQTHTKKSEKYIDLQVPEIMTFDNTIGVPKHVAPNDSFGRVKGVEYSGRVRGVRYGVTPSQVGLSRTGKGIGQSSADDSQSHSHLLGYCPTASEALD RVQPLEEEIRMMREEMTRGKQQVQEDKEEQEDKEEDDYDNY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10043004 [exp]	0	1
					Lus10003082 [exp]	2.0	1.0000
					Lus10029072 [exp]	5.5	1.0000
AT5G22450			unknown protein		Lus10000530 [exp]	5.7	1.0000
					Lus10011642 [exp]	7.9	1.0000
					Lus10029652 [exp]	8.8	0.9904
					Lus10022214 [exp]	9.0	1.0000
					Lus10003536 [exp]	9.9	1.0000
					Lus10027991 [exp]	10.4	1.0000
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10013028 [exp]	10.8	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	11.3	1.0000

Compare expression of checked genes

Lus10043004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.