Plant FIBer expression Database

Lus10043005 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51150 731 / 0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
AT1G34630 99 / 5e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032508
[exp]
998 / 0 AT5G51150 775 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Lus10034188
[exp]
97 / 4e-21 AT1G34630 681 / 0.0 unknown protein
Lus10043395
[exp]
67 / 1e-11 AT1G34630 374 / 2e-128 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G111200
[exp]
781 / 0 AT5G51150 767 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Potri.012G113700
[exp]
757 / 0 AT5G51150 744 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Potri.002G096500
[exp]
105 / 5e-24 AT1G34630 667 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10043005 pacid=23168195 polypeptide=Lus10043005 locus=Lus10043005.g ID=Lus10043005.BGIv1.0 annot-version=v1.0
ATGCCTTCGCCCCTCTCCGAATCTCCCACTCCGCCGCCCTCTCCTGCGCCACCGCCCTCCGCAGCCGCCAACGACAATTCCGATGCCGAGCGCCGCCTTC
GCGAGGCCGAGGAGCGCCTCCGCGATGCCATACATGAGCTGCAGCGTCGTCAGCGCAAAGCCGCCCTCGGCCTAGCTGGCTATCCTCCCTGTGATCATCC
TCCCGACGAATCCTGCGTCGCTCACGCCATCGGAAATCTCTGCCAGAGCTTCCTCCTCTCCTACGGCGTCCGAGTTGGAATCGGTATCTTGCTTCGCGCT
TTTAAACTTGCTAAGGGCCAGTCTTACTCTTCCTTGCTCGATCTCAAGCAACTAGTATCGGAGAAAGATCTGATTGTAAGAGAAGAGGCTTGCCGTGTTG
GTTTACTTTTCGGTGGATTTACGGGGTCTTATCATGCGCTTAGATGTTTGCTAAGGAAATGGCGAAAGAAGGAGACTCCTTTCAATGCAATTTTAGCAGG
TTCGGTTGCTGGATTGTCGGTTTTAGCATTGGATGATCCCAACCGGAGGCGCACTCTTGCTCTTTATCTTTTGGCTAGATTAGCTCAGTGTGCGTATAAT
TCTGCTAAATCTAAGAACAAGTTTCACCTTTGGGGTAGCCATTGGAGACATGGGGACACATTGCTCTTCGCTCTGGCATGTGCACAGGTTATGTATGCCT
TTGTGATGCGTCCTGAGAGTTTACCAAAAGCATATCATGACTTCATTCAGAAAACCGGGCCAGTTGCACAGCCTGTCTACAAGGCTGTAAGAGAAAGTTG
TAGAGGTGGCCCTGTGGACGTTGCAGCACTTTCAGCTTATTTAGCTACAAAGGGAAAGCTAGCCTCTGTCAAGTTGGAAGAGTTCCCTTCCATCATCCCT
TGTTCTATTATTCATCCGGGTACAGATTCGTGTTCAATTCAACACGGTAATGCAGCATATGCTACATTTAGGAAAACATTCCCTCTCTATTTCTCATTGA
CTTTCGTGCCTTACGTCGTGCTGCACCTTCAAAAGGTATCATCTTTGACTCCATTGATCTTTTGCCTTCTAATATTACCTGTTGGAAGGAAGAAAATGTC
TGAATATCTATGCATTGTTCTTTCACCTGATGCCGTTATACCTATAAAGTTCATGGATGCTCCTGCACGTACGTGTTGGCTTGCTCTTAGGGATGCTGTT
CGCTCAACGACATTCTTGTCTGCATTTGTTGGGATATTCCAGAGTGTGATTTGTCTGCATCGAAAAGTTGCTGTCAAAGACCACAAGCTGTTGTACTGGA
TATCAGGTGGATTATCTGCACTTTCTGTACTATTTGAGAAAAAATCCAGGCGTGCAGAACTCGCCTTGTATGTTCTTCCGCGTGCTGGAGATTCATTGTG
GTACATTTTAGTCAACCGCCACATAGTTCCGAATTTAAAGAATGCCGAGGTAGCACTATTTTGTGCTTGCATGGGTGGCATTATGTATTACTTGGAACAT
GAGCCAGACACCATGGCCCCCTTCCTCAGGGGTTTAATCCGTCGCTTCTTGGCCAGCAGAATCAGCAGCCCAAGCCCTTCATCGAACCGCGGAGCATCAT
CTTACACATATTTGCAGACTCTGGATTCAACGAAGAAGCCAAAGTGTCAGGATGGCAAAGAAGTTGAAGCTTCTCCTCATAAATACAACCTTGAGTCCAT
TCCAGGTCTCTAA
AA sequence
>Lus10043005 pacid=23168195 polypeptide=Lus10043005 locus=Lus10043005.g ID=Lus10043005.BGIv1.0 annot-version=v1.0
MPSPLSESPTPPPSPAPPPSAAANDNSDAERRLREAEERLRDAIHELQRRQRKAALGLAGYPPCDHPPDESCVAHAIGNLCQSFLLSYGVRVGIGILLRA
FKLAKGQSYSSLLDLKQLVSEKDLIVREEACRVGLLFGGFTGSYHALRCLLRKWRKKETPFNAILAGSVAGLSVLALDDPNRRRTLALYLLARLAQCAYN
SAKSKNKFHLWGSHWRHGDTLLFALACAQVMYAFVMRPESLPKAYHDFIQKTGPVAQPVYKAVRESCRGGPVDVAALSAYLATKGKLASVKLEEFPSIIP
CSIIHPGTDSCSIQHGNAAYATFRKTFPLYFSLTFVPYVVLHLQKVSSLTPLIFCLLILPVGRKKMSEYLCIVLSPDAVIPIKFMDAPARTCWLALRDAV
RSTTFLSAFVGIFQSVICLHRKVAVKDHKLLYWISGGLSALSVLFEKKSRRAELALYVLPRAGDSLWYILVNRHIVPNLKNAEVALFCACMGGIMYYLEH
EPDTMAPFLRGLIRRFLASRISSPSPSSNRGASSYTYLQTLDSTKKPKCQDGKEVEASPHKYNLESIPGL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G51150 Mitochondrial import inner mem... Lus10043005
[exp]
0 1
AT4G26750 EXT-like extensin-like, hydroxyproline-... Lus10012781
[exp]
2.6 0.8114
AT1G26110 DCP5 decapping 5 (.1.2) Lus10017884
[exp]
5.8 0.7972
AT4G39220 ATRER1A Rer1 family protein (.1) Lus10028317
[exp]
7.5 0.7591
AT3G23340 CKL10 casein kinase I-like 10 (.1) Lus10000553
[exp]
7.7 0.7885
AT3G07400 lipase class 3 family protein ... Lus10009590
[exp]
9.9 0.7905
AT1G34780 ATAPRL4 APR-like 4 (.1.2) Lus10020928
[exp]
17.1 0.7426
AT1G69220 SIK1 Protein kinase superfamily pro... Lus10036915
[exp]
18.7 0.7199
AT2G32700 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_ho... Lus10011863
[exp]
19.5 0.7829
AT3G10300 Calcium-binding EF-hand family... Lus10042037
[exp]
23.2 0.7514
AT1G43850 SEU SEUSS transcriptional co-regul... Lus10042785
[exp]
24.7 0.7534

Lus10043005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.