Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07440 649 / 0 GDH2 glutamate dehydrogenase 2 (.1.2.3) AT5G18170 587 / 0 GDH1 glutamate dehydrogenase 1 (.1) AT3G03910 578 / 0 GDH3 glutamate dehydrogenase 3 (.1) AT1G51720 119 / 1e-29 Amino acid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032509 [exp] 717 / 0 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10005697 [exp] 592 / 0 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10020288 [exp] 591 / 0 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10003858 [exp] 582 / 0 AT5G18170 782 / 0.0 glutamate dehydrogenase 1 (.1) Lus10006872 [exp] 120 / 1e-29 AT1G51720 1019 / 0.0 Amino acid dehydrogenase family protein (.1) Lus10037612 [exp] 102 / 1e-23 AT1G51720 947 / 0.0 Amino acid dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G111000 [exp] 654 / 0 AT5G07440 773 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.012G113500 [exp] 643 / 0 AT5G07440 766 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.013G058300 [exp] 579 / 0 AT5G18170 787 / 0.0 glutamate dehydrogenase 1 (.1) Potri.019G034800 [exp] 575 / 0 AT5G18170 783 / 0.0 glutamate dehydrogenase 1 (.1) Potri.001G199600 [exp] 125 / 1e-31 AT1G51720 1033 / 0.0 Amino acid dehydrogenase family protein (.1) Potri.001G193600 [exp] 46 / 1e-05 AT1G51720 303 / 7e-100 Amino acid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF02812 [flax] [poplar] ELFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CL0063 [flax] [poplar] NADP_Rossmann PF00208 [flax] [poplar] ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10043007 pacid=23168384 polypeptide=Lus10043007 locus=Lus10043007.g ID=Lus10043007.BGIv1.0 annot-version=v1.0 ATGAAGGGAGGAATCAGATATCATCCCGAGGTTGACCCAGATGAGGTGAACGCATTGGCTCAGCTGATGACATGGAAGAGTGCAGTGGCTGATATTCCTT ACGGTGGAGCCAAAGGTGGAATCGGATGCACTCCGAGGGATTTGAGTACAAGCGAGTTGGAAAGACTCACTCGCGTCTTCACTCAGAAGATCCACGACCT TATCGGTACTCATACTGACGTTCCTGCTCCAGACATGGGCACTAATGCTCAGACCATGGCATGGATATTGGATGAGTACTCAAAGTTTCATGGTCACTCC CCAGCGGTTGTCACAGGAAAGCCTATTGATCTCGGAGGGTCACTGGGTAGGGAAGCTGCGACAGGTCGCGGAGTTGTTTTCGCTACAGAAGCCATGCTTG CTGAGTATGGCAAGTCAATTGAAGGTCTGACATTTGTGATTCAGGGTTTTGGTAATGTGGGGTCATGGGCAGCAAAGATCTTCCACGAGAAAGGTGGAAA GGTTATAGCAGTGAGTGACATTACTGGTGCTGTTAGGAACCCAGATGGGATTGACATACCTGCACTGATTGCATTCAAGGAATCCACTGGTAGTTTGACC AATTTCCCAGGAGCAGATTCCATGAACCCTAATGAACTTCTTGTACATGAATGTGATGTCCTGGTTCCTTGTGCATTGGGAGGAGTCTTGAACAAAGAAA ATGCTACTCATGTAAAAGCCAAATACATTATAGAGGCAGCAAATCATCCAACTGATCCAGAAGCAGATGAGATTCTATCAAAGAAAGGAGTGGTTATACT CCCAGATATCTATGCAAATGCTGGAGGTGTTACTGTCAGTTACTTCGAATGGGTTCAGAACATTCAAGGATTCATGTGGGAAGAGGAGCAGGTGAATAAG GAACTGAAGAAGTACATGACTCGAGCTTTCAAGAACATCAAGGGAATGTGCCAAACGCACGATTGCAACCTTCGGATGGGGGCATTTACGCTCGGATTAA ATCGGGTTGCCAGAGCCACCCTGTTAAGAGGATGGGAAGCTTGA
AA sequence Show only first row Show all	>Lus10043007 pacid=23168384 polypeptide=Lus10043007 locus=Lus10043007.g ID=Lus10043007.BGIv1.0 annot-version=v1.0 MKGGIRYHPEVDPDEVNALAQLMTWKSAVADIPYGGAKGGIGCTPRDLSTSELERLTRVFTQKIHDLIGTHTDVPAPDMGTNAQTMAWILDEYSKFHGHS PAVVTGKPIDLGGSLGREAATGRGVVFATEAMLAEYGKSIEGLTFVIQGFGNVGSWAAKIFHEKGGKVIAVSDITGAVRNPDGIDIPALIAFKESTGSLT NFPGADSMNPNELLVHECDVLVPCALGGVLNKENATHVKAKYIIEAANHPTDPEADEILSKKGVVILPDIYANAGGVTVSYFEWVQNIQGFMWEEEQVNK ELKKYMTRAFKNIKGMCQTHDCNLRMGAFTLGLNRVARATLLRGWEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10043007 [exp]	0	1
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	2.6	0.9757
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	5.7	0.9638
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10019755 [exp]	7.1	0.9634
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10030092 [exp]	7.2	0.9596
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	7.3	0.9682
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	7.3	0.9557
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10005997 [exp]	8.4	0.9605
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	9.2	0.9603
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10032952 [exp]	10.1	0.9559
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10016369 [exp]	10.2	0.9625

Compare expression of checked genes

Lus10043007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.