Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51120 243 / 6e-82 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT5G10350 230 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT5G65260 223 / 7e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G36660 54 / 2e-08 PAB7 poly(A) binding protein 7 (.1) AT2G16940 52 / 8e-08 Splicing factor, CC1-like (.1.2.3) AT3G10400 48 / 1e-06 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT5G43960 45 / 1e-05 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT1G32790 45 / 1e-05 CID11 CTC-interacting domain 11 (.1.2) AT3G49390 44 / 3e-05 CID10 CTC-interacting domain 10 (.1.2) AT1G74230 44 / 4e-05 GR-RBP5 glycine-rich RNA-binding protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032509 [exp] 324 / 5e-108 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10032510 [exp] 296 / 7e-103 AT5G65260 278 / 2e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009323 [exp] 223 / 1e-74 AT5G65260 268 / 2e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015840 [exp] 218 / 1e-72 AT5G65260 261 / 9e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10037701 [exp] 70 / 1e-13 AT3G12640 412 / 2e-135 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015696 [exp] 68 / 3e-13 AT3G12640 417 / 1e-136 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025075 [exp] 57 / 3e-09 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10034466 [exp] 57 / 3e-09 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10008275 [exp] 50 / 4e-07 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G115100 [exp] 275 / 2e-94 AT5G65260 271 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G110800 [exp] 271 / 7e-93 AT5G51120 266 / 1e-90 polyadenylate-binding protein 1 (.1.2.3) Potri.007G095800 [exp] 239 / 1e-80 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.005G073200 [exp] 239 / 1e-80 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.017G051600 [exp] 235 / 5e-79 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G311600 [exp] 215 / 4e-71 AT5G65260 238 / 2e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G063800 [exp] 63 / 2e-11 AT3G12640 418 / 6e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G269200 [exp] 62 / 4e-11 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G079800 [exp] 58 / 1e-09 AT2G24350 102 / 8e-23 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G177000 [exp] 55 / 1e-08 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10043008 pacid=23168376 polypeptide=Lus10043008 locus=Lus10043008.g ID=Lus10043008.BGIv1.0 annot-version=v1.0 ATGGATCAGCACGCCGATCACGAGTACGAACAGGAGCACGAGGAAGAAGAGGTTTACGGAGGCGAAATCCCATACGAGGGAGACATGGAAGACGATGTTG ACATGACTAATAGACCTGAAGACGACGAAAACACTGACAGGAGTGCCAAGGAACTGGAGGATATGAAGAAGAGGCTGAAAGAGATCGAAGAAGAAGCTGG AGCTCTTCGTGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGCGCTGTCCAAGATCCCTCAGGTTCTTCTGCATCTTTGGCTGAAAAGGAGGAAGTGGAT GCCCGCTCAATTTATGTTGGCAATGTAGACTATGCTTGCACTCCTGAAGAAGTTCAGCAGCATTTTCAATCTTGCGGAACTGTCAACAGGGTGACAATTT TGACTGACAAGTTTGGCCAGCCAAAGGGTTTGGTTTTTGCGTATTTTGAGTTTGTGGAGGTTGATGCTGTCCAGAATGCACTACTGCTAAATGAATCTGA ATTGCATGGCCGTCAACTGAAGGTCTCTGCTAAGAGAACAAACGTTCCTGGAATGAAGCAATTCCGTGGAAGGCGGGCCAACCCTAATTTCAGATTCCGA AGGCCTTTCATGCCTGTTCCTTTCTATCAGCCATATGGCTATGGGTGA
AA sequence Show only first row Show all	>Lus10043008 pacid=23168376 polypeptide=Lus10043008 locus=Lus10043008.g ID=Lus10043008.BGIv1.0 annot-version=v1.0 MDQHADHEYEQEHEEEEVYGGEIPYEGDMEDDVDMTNRPEDDENTDRSAKELEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDPSGSSASLAEKEEVD ARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGLVFAYFEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQFRGRRANPNFRFR RPFMPVPFYQPYGYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	0	1
AT5G26200			Mitochondrial substrate carrie...		Lus10026466 [exp]	1.0	0.7987
AT4G21110			G10 family protein (.1)		Lus10023881 [exp]	4.2	0.7085
AT3G15970			NUP50 (Nucleoporin 50 kDa) pro...		Lus10037931 [exp]	4.5	0.7867
AT1G18850			unknown protein		Lus10023616 [exp]	4.9	0.7732
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	7.7	0.7133
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10004362 [exp]	10.7	0.7101
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10013853 [exp]	11.8	0.6673
AT5G22840			Protein kinase superfamily pro...		Lus10020515 [exp]	12.4	0.6937
AT1G18850			unknown protein		Lus10024247 [exp]	16.4	0.6798
AT1G55040			zinc finger (Ran-binding) fami...		Lus10031502 [exp]	19.7	0.6690

Compare expression of checked genes

Lus10043008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.