Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33270 344 / 2e-114 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 342 / 1e-113 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G27080 328 / 6e-108 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G26900 323 / 3e-106 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27570 315 / 1e-103 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT4G22910 292 / 5e-94 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT4G11920 289 / 8e-93 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT5G13840 283 / 2e-90 FZR3 FIZZY-related 3 (.1.2) AT5G27945 266 / 3e-84 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 80 / 3e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037593 [exp] 344 / 1e-114 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 340 / 4e-113 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006853 [exp] 344 / 7e-110 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 325 / 2e-107 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042748 [exp] 301 / 2e-93 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10040282 [exp] 292 / 6e-91 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10042765 [exp] 280 / 1e-90 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10024482 [exp] 283 / 3e-90 AT4G22910 733 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Lus10001192 [exp] 282 / 1e-89 AT4G22910 734 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110300 [exp] 600 / 0 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G021800 [exp] 357 / 1e-119 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.013G048900 [exp] 355 / 8e-119 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 350 / 4e-117 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G118400 [exp] 340 / 1e-112 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.010G202100 [exp] 291 / 1e-93 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.008G057500 [exp] 284 / 1e-90 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.001G112700 [exp] 279 / 1e-88 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.003G119500 [exp] 274 / 9e-87 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.007G009500 [exp] 77 / 3e-15 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10043009 pacid=23168034 polypeptide=Lus10043009 locus=Lus10043009.g ID=Lus10043009.BGIv1.0 annot-version=v1.0 ATGGACGACGATAAGGAGATGACGCTGCTCCAATCAGATTGGTACTCCCCCAGGCGACTCCATGACAGTCCGACTCAATACCATTTCCCCGGCGATCGTT TCATCCCCAACAGAAGCTTGATGAATCTTGATCAAGTCAATGGTTGCTTCACAAATTCCACCACACCACTCCGCAACCCCAATTTCAGTGAACTGTACAG GAGAAGACTATCGGACAGTCTAAATCTAGACTCGGACGGAAAACCCTTCAGGATGTTGGTTTTCAGGGGAAGCCCCAAATCATCCACCCGTAAGAAATCT CTACGCTTCATCGACGAGATGCGAAGGCAAGACGCAGAGGCCTTGACACGTGTCCATCAAAACCACCACCATCACTCTCGACGCTTGCCAGAGAGTGAAG CTAGGATCTTGGATGCACCTAATATCAGAAACGACTATTACGTAAGCATAATCGACTGGGGAAAGAACAATCTTCTTGCTGTCGCTTTAGGGAGAGCAGT GTTCCTCTGGAACTCTGATAGCCAAGTCGTTACTAAGCTGTCGGAGGTTCGGGTCAGCAATGATTTCGACTGTCCGGTAAGCGTAGCTTGGTCTCGTGAT TCACGAAGCTTGGCGGTTGGCTACATGTGCTCCAAACTTGAGCTTTGGGATGTCGAGACTTCCAAATGTATTCACAGTCTCCAAGGTCATACCTCAAGAA TTGCAGCCATTTCCTGGAACAGCCACACCGTAACGTCAGGAAGCAAAGACAAGTCCATCACCAACCATGACGTGAGGGCAGGAAGCAACCCTGTCTCCTG CATAACAAAGCACAGCGATGAAGTTTGTGGCTTGAAATGGTCCAGAGGAGGCAACATGCTAGCAAGTGGTGGCAACGAGAATTCAATTTACATATGGGAA GCTTCCAAGATGAGCTCTTCCAAATTCCTGCACAGATTCACCGACCATTGCGCTGCAGTAAAAGCTCTCGCATGGTGTCCGTACCAATTTGGGGTGCTTG CATCAGGTGGAGGCACAAACGACAGGTGTATCAAGATATGGAATACACAGATCGGGACTCGTTTGGCCAGTGTAGACACTGAAGCGCAGATTTGTGGACT GGAGTGGAATGTGCATCATAAGGAGATTCTGAGTGGGCACGGATATGGTACAGGGGAGGTTAGAAACCAGCTTTGCATGTGGAAGTACCCTTCGTTGAAG AGAATTGGGGAACTGAGGAATCACAGATCGAGAATAATCAATCTTTGTCAGAGTCCTGATGGGTTGACAGTGGTTTCAGCAGGAGGGGATGAGACTCTGA GGTTCTGGGAAATATTTGGGCCGCCTTGTAAGGAGAAGCTTTCTGATCTTGACAGTCTTTTGTCTCTGAAAACATCCCCCTTAAGATGA
AA sequence Show only first row Show all	>Lus10043009 pacid=23168034 polypeptide=Lus10043009 locus=Lus10043009.g ID=Lus10043009.BGIv1.0 annot-version=v1.0 MDDDKEMTLLQSDWYSPRRLHDSPTQYHFPGDRFIPNRSLMNLDQVNGCFTNSTTPLRNPNFSELYRRRLSDSLNLDSDGKPFRMLVFRGSPKSSTRKKS LRFIDEMRRQDAEALTRVHQNHHHHSRRLPESEARILDAPNIRNDYYVSIIDWGKNNLLAVALGRAVFLWNSDSQVVTKLSEVRVSNDFDCPVSVAWSRD SRSLAVGYMCSKLELWDVETSKCIHSLQGHTSRIAAISWNSHTVTSGSKDKSITNHDVRAGSNPVSCITKHSDEVCGLKWSRGGNMLASGGNENSIYIWE ASKMSSSKFLHRFTDHCAAVKALAWCPYQFGVLASGGGTNDRCIKIWNTQIGTRLASVDTEAQICGLEWNVHHKEILSGHGYGTGEVRNQLCMWKYPSLK RIGELRNHRSRIINLCQSPDGLTVVSAGGDETLRFWEIFGPPCKEKLSDLDSLLSLKTSPLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10043009 [exp]	0	1
AT2G30530			unknown protein		Lus10034444 [exp]	2.0	0.8132
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	2.8	0.8239
AT3G02125			unknown protein		Lus10032983 [exp]	3.9	0.7322
					Lus10006458 [exp]	4.0	0.7651
AT3G27970			Exonuclease family protein (.1...		Lus10022230 [exp]	5.0	0.7621
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10007794 [exp]	27.7	0.7558
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011505 [exp]	29.5	0.7109
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042404 [exp]	31.8	0.7214
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	33.1	0.7514
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10014439 [exp]	33.5	0.7002

Compare expression of checked genes

Lus10043009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.