Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22410 300 / 7e-101 RHS18 root hair specific 18 (.1) AT5G17820 278 / 2e-92 Peroxidase superfamily protein (.1) AT3G03670 268 / 2e-88 Peroxidase superfamily protein (.1) AT4G11290 249 / 8e-81 Peroxidase superfamily protein (.1) AT4G26010 245 / 1e-79 Peroxidase superfamily protein (.1) AT3G32980 246 / 2e-79 Peroxidase superfamily protein (.1) AT3G01190 242 / 2e-78 Peroxidase superfamily protein (.1) AT1G05260 242 / 5e-78 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G24070 242 / 6e-78 Peroxidase superfamily protein (.1) AT4G08770 241 / 2e-77 Prx37 peroxidase 37, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032511 [exp] 660 / 0 AT5G22410 302 / 8e-102 root hair specific 18 (.1) Lus10004859 [exp] 360 / 2e-124 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10005679 [exp] 283 / 3e-94 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10018375 [exp] 275 / 7e-91 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10020312 [exp] 275 / 8e-86 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10013631 [exp] 259 / 8e-85 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10032926 [exp] 259 / 1e-84 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10001324 [exp] 258 / 3e-84 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10028736 [exp] 247 / 3e-80 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110200 [exp] 464 / 1e-165 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.001G218450 [exp] 308 / 6e-104 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.001G218500 [exp] 308 / 6e-104 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.013G066800 [exp] 278 / 4e-92 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 262 / 7e-86 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 260 / 4e-85 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 251 / 7e-82 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 248 / 3e-80 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 247 / 3e-80 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 247 / 3e-80 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10043010 pacid=23167923 polypeptide=Lus10043010 locus=Lus10043010.g ID=Lus10043010.BGIv1.0 annot-version=v1.0 ATGATGACCAAGGAGACGGCCATTGCTGGGTTTATGGTGGGGCTGCTACTACTCTCAGGAGATCCGTTGATTTGCTACGGTGCACTCCAAGTAGGATTTT ACAGAGGGAAATGTGGCTTCGCTGACGTGGAAGCCATCGTCGGCGGCCTCGTTTCCTCTCATCTCTTTAGAGACCCTTCCATCCTCGCTTCCCTTATCCG CCTCCATTTCCATGATTGTTTCGTCAATGGCTGTGATGCATCCATTCTCCTGGACGGTCCAGACACCGAGAAAACCGCATCACCCAACCACAGTGTCAGA GGTTACGAGATTATCGACCAGGCTAAGGCCGCCGTCGACAAAATCTGCCCTGGTGTCGTTTCTTGTGCTGACCTCATTGCCATTGCCGCCCGCGACGCTG TTTTCCTCAGTGGAGGAGGTATATACAGAGTCCAAACAGGGAGAAAAGATGGGCTAGTTTCGTCGGCAGATATAGCCAATGTGACACTCCCCGGACCTTC CATTACAGTCCCGCAGGCCGTTGCCGCATTTGCTGACAAGGGTCTCACCGCTGTTGACATGGTTCTCCTTCTAGGAGCTCATTCAGTTGGAGTAGCACAC TGCTCATTCCTGGACGAACGTATCCACAATTTCAGGGGCAGCGGCAGACCCGACCCGTCAATGGACCAATTCACGGCCAATACCTTGAGATCAAGGTGCC CCATCAACTCAATCGAGAACACAGTCAACCTTGACCAGAATCCCTTCAGCCCATTTGTGTTGGACAATTCGTACTACCAGAACATACTGCTGCGGCGAGG GGTTCTCCAGATTGACCAGGAGCTTGGAATGAACAGATTCACACGTCCAATAGTTGCCAATTTGGCCGGTGCTATCGACTTTCCGGCTCGGTTTGGTGCG GCTATGGTCCGCCTAGGGGCTGTTGGTGTTCTTACGGGGACTCAGGGTGAGGTTAGGAGGTCTTGCAGAGTGGTTAACAAAGTTGTTAGTAAAGATGAAT CTGGCTAG
AA sequence Show only first row Show all	>Lus10043010 pacid=23167923 polypeptide=Lus10043010 locus=Lus10043010.g ID=Lus10043010.BGIv1.0 annot-version=v1.0 MMTKETAIAGFMVGLLLLSGDPLICYGALQVGFYRGKCGFADVEAIVGGLVSSHLFRDPSILASLIRLHFHDCFVNGCDASILLDGPDTEKTASPNHSVR GYEIIDQAKAAVDKICPGVVSCADLIAIAARDAVFLSGGGIYRVQTGRKDGLVSSADIANVTLPGPSITVPQAVAAFADKGLTAVDMVLLLGAHSVGVAH CSFLDERIHNFRGSGRPDPSMDQFTANTLRSRCPINSIENTVNLDQNPFSPFVLDNSYYQNILLRRGVLQIDQELGMNRFTRPIVANLAGAIDFPARFGA AMVRLGAVGVLTGTQGEVRRSCRVVNKVVSKDESG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10043010 [exp]	0	1
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026681 [exp]	2.2	0.9109
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	8.9	0.8860
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	9.9	0.9034
AT2G27550		ATC	centroradialis (.1)		Lus10004886 [exp]	11.3	0.8731
AT1G68890			magnesium ion binding;thiamin ...		Lus10030915 [exp]	11.6	0.9024
AT1G31040			PLATZ transcription factor fam...		Lus10036226 [exp]	12.0	0.8682
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036633 [exp]	14.4	0.9007
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10042349 [exp]	16.3	0.8779
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	23.1	0.8844
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10000450 [exp]	24.9	0.8508

Compare expression of checked genes

Lus10043010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.