Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67570 368 / 3e-124 Protein of unknown function (DUF3537) (.1) AT3G20300 179 / 3e-51 Protein of unknown function (DUF3537) (.1) AT1G50630 157 / 5e-43 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT4G22270 147 / 9e-40 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT2G21080 144 / 1e-38 unknown protein AT4G03820 136 / 2e-35 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032513 [exp] 622 / 0 AT1G67570 319 / 4e-106 Protein of unknown function (DUF3537) (.1) Lus10011371 [exp] 387 / 2e-131 AT1G67570 529 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10006430 [exp] 328 / 6e-109 AT1G67570 435 / 3e-150 Protein of unknown function (DUF3537) (.1) Lus10032512 [exp] 201 / 5e-64 AT1G67570 94 / 5e-24 Protein of unknown function (DUF3537) (.1) Lus10009722 [exp] 179 / 7e-50 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10033919 [exp] 175 / 8e-50 AT3G20300 476 / 2e-166 Protein of unknown function (DUF3537) (.1) Lus10002334 [exp] 174 / 1e-49 AT3G20300 616 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10036448 [exp] 160 / 4e-44 AT2G21080 450 / 5e-157 unknown protein Lus10024308 [exp] 157 / 4e-43 AT3G20300 473 / 5e-165 Protein of unknown function (DUF3537) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092200 [exp] 489 / 2e-172 AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1) Potri.012G094700 [exp] 481 / 6e-169 AT1G67570 417 / 2e-143 Protein of unknown function (DUF3537) (.1) Potri.008G178100 [exp] 392 / 7e-134 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1) Potri.001G356200 [exp] 174 / 2e-49 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1) Potri.006G279200 [exp] 157 / 2e-43 AT2G21080 453 / 6e-158 unknown protein Potri.018G002700 [exp] 157 / 6e-43 AT2G21080 447 / 9e-156 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [flax] [poplar] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Lus10043011 pacid=23168387 polypeptide=Lus10043011 locus=Lus10043011.g ID=Lus10043011.BGIv1.0 annot-version=v1.0 ATGGAGGACTCCACTTCCTCACAATCCAGGCTGTTAGAACTGGAAAAGGAACAAGAAGAAGAAGAACAACACAACCACGACACCAACGTCTCCAAATCTC TCAACCGACTTGAGACTTTCCTCAAAATATTCGGCTTCTGCCAGAACTCCTGGTTCTCCGTCCTGCTTTCCTGGCTCTGCTTCCTCCTCATCGCCGTCGC TCTCCCGCTTTTCATCTTCTACTTCTTCGACTCTTCCACCGCCGAGATCAAGACCTTCGAGCTCGAGATTTTGGCCTTTCAGTCTCTTGTCGCTGCCTTC TCCCTTCTCTGCATTTCCCACAATCTCAGAAAATATGGCGTCAGGAAGTTCCTCTTTGCCGATCGCTCCCACGGCCACTGTTCCCAGCTGGACACTGAAT ACGCCAACAAAATTAACGATTTCTTCTCCCTGCTGGCAGTCTGGCTACTACCATGCCTCCTTGTGAAGACAGCTCGTGAAGTGATTCGTATTGTGTACCT GCGCCATGGTCCATTATGGCAATCTATTGGTCTTCTGATTGCCTTGACTGTCTCCTGGACTTACTCCAGTGTTATCTTTCTCTCCGGCTGCACTTTGTTC AACTTAGTGTGCAACTTCCAAGTTATACGGTTTGAAAACTATGGCAAGCTCCTTGAAAGAGACTTGGAAGTTTCTGAATACATCGAGGAACATATTCGTC TTACACATTACATGTCCAAGATAAGCCACCGGTTCAGACTCTTCTTTGTTTTTGAGCTCTTGATTGTGACGGCCAGTCTCTTTGTCGCCTTGGTTGAAAC TACGGGAAATCACGGCCTCATCAATCTCATCAATGGAGCTGATTTTGGGGTTACTGCTATAGTTGAGCTTGTTGGACTAGTGATATGCCTACATGCTGCT ACCAAGGTATCGCATCGAGCTCAAGGTATAGTGTCCGTAGCCACTAGATGGCATTCTTTGTCTACTTGTACATCCAGTGAGACGACTTCTCAAATGGCAA TAAGCACCAATGGTAATGGTAATGGGGCCCCTCTTCCCACTTCCTCGAACTTCTTCCACCAGACTTACTCGGAGAGCGATTTGGAGGCAGTTGATTATGT GCCGACGCCTACAAATACGGCATTGTCTTCCTATCAGAAGAGACAAGCTTTCGTAATGTACCTCATGGCGAACCTGGGCGGGTTTACAGTCTTTGGGTGG ACAATAGACAGAGCTCTGGTGAATACCATCTTCTTTCTGGAGGTATCACTTGCTATGTTTGTGCTGGGGAAGACTATTACTTTCCCTTCCCATTGA
AA sequence Show only first row Show all	>Lus10043011 pacid=23168387 polypeptide=Lus10043011 locus=Lus10043011.g ID=Lus10043011.BGIv1.0 annot-version=v1.0 MEDSTSSQSRLLELEKEQEEEEQHNHDTNVSKSLNRLETFLKIFGFCQNSWFSVLLSWLCFLLIAVALPLFIFYFFDSSTAEIKTFELEILAFQSLVAAF SLLCISHNLRKYGVRKFLFADRSHGHCSQLDTEYANKINDFFSLLAVWLLPCLLVKTAREVIRIVYLRHGPLWQSIGLLIALTVSWTYSSVIFLSGCTLF NLVCNFQVIRFENYGKLLERDLEVSEYIEEHIRLTHYMSKISHRFRLFFVFELLIVTASLFVALVETTGNHGLINLINGADFGVTAIVELVGLVICLHAA TKVSHRAQGIVSVATRWHSLSTCTSSETTSQMAISTNGNGNGAPLPTSSNFFHQTYSESDLEAVDYVPTPTNTALSSYQKRQAFVMYLMANLGGFTVFGW TIDRALVNTIFFLEVSLAMFVLGKTITFPSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67570			Protein of unknown function (D...		Lus10043011 [exp]	0	1
AT1G12310			Calcium-binding EF-hand family...		Lus10004332 [exp]	1.7	0.8948
					Lus10026314 [exp]	4.2	0.8698
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	6.5	0.8569
AT1G72510			Protein of unknown function (D...		Lus10013156 [exp]	6.5	0.8926
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021852 [exp]	7.4	0.8388
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10011215 [exp]	7.7	0.8187
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10013113 [exp]	7.9	0.8490
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10029992 [exp]	8.1	0.8368
AT1G04560			AWPM-19-like family protein (....		Lus10014456 [exp]	8.9	0.8304
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	9.5	0.8601

Compare expression of checked genes

Lus10043011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.