Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00650 176 / 3e-50 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1) AT5G48385 103 / 4e-23 FRIGIDA-like protein (.1) AT4G14900 91 / 3e-19 FRIGIDA-like protein (.1) AT3G22440 91 / 5e-19 FRIGIDA-like protein (.1) AT1G31814 88 / 3e-18 FRL2 FRIGIDA like 2 (.1) AT5G16320 72 / 4e-13 FRL1 FRIGIDA like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032514 [exp] 1084 / 0 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10022433 [exp] 497 / 6e-170 AT4G00650 202 / 7e-60 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10016738 [exp] 473 / 4e-161 AT4G00650 193 / 8e-57 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10002146 [exp] 104 / 2e-23 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10008744 [exp] 103 / 4e-23 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Lus10006113 [exp] 85 / 4e-17 AT3G22440 686 / 0.0 FRIGIDA-like protein (.1) Lus10010560 [exp] 84 / 1e-16 AT3G22440 714 / 0.0 FRIGIDA-like protein (.1) Lus10009979 [exp] 77 / 3e-14 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10038038 [exp] 75 / 1e-13 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110066 [exp] 214 / 4e-64 AT4G00650 140 / 5e-39 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Potri.015G110132 [exp] 162 / 3e-44 AT5G48385 54 / 8e-08 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 103 / 4e-23 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.014G175200 [exp] 103 / 5e-23 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.008G153000 [exp] 101 / 1e-22 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 93 / 1e-19 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.007G050800 [exp] 92 / 3e-19 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.005G044000 [exp] 86 / 3e-17 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G043900 [exp] 84 / 1e-16 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044100 [exp] 76 / 5e-14 AT5G27230 116 / 1e-26 Frigida-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10043012 pacid=23168132 polypeptide=Lus10043012 locus=Lus10043012.g ID=Lus10043012.BGIv1.0 annot-version=v1.0 ATGGAGAAACCTCCCGTCTCTAATCCCGCGGTTCCTGATGCTGCTGCCACCTCCCCGCCAAAATCAGCCATTGCTCAGGTGGAGTTCGAATCAGAATCAA CGCCGCAGCTGCCACTGGAAGCGAATGGCCTCCCGATCGTCGAATTTTCGCAACACGAGGAGCAGCAGCAGTCTCGGATTTTGGATTCGGTGGAAGGATT ATCCACTGTATCATCCGCCATTCAGAAATTCAGGAGCAGGTTCGACGAATTGGAGAAGCATCTCAATTTCGTCCGGATTGCTTTGGAGGTTCGGGAGCAG CCGTACGGTAAAATCGACGGAGGCACAGCGAAGCCAGGAGGAGGAGCCAGGGCCGAGTTATACAGCCTTTGCGAGACCATGTGCGGCAGAAGTCTGCGTA AGTACATCATCGCTCGCTTAGACGGCGTCCAGAAGCTACGTCGAGAAGTGCCATTGGCTCTTAAAAGAGCTCGGAAGCCAGCAAAGCTCGTGATGGATTG CATCGGGGGGTTTTATCTTCAAGGGAGCAGGGCTTACACCAAGGACTCTCCGATGATTCCAGGGCGAGAAGCTTGCATTCTTGCTCTGGAGTTTTTGTTG ATGACGATTGAAGGTGAAGTTGAACTGGATGACAAGGTGAGGCAAGAGTCGATTCAGGCTGCTGTGAATTGGAGAAAGAGGCTTGTAATGGAAGGCGGCC TTCGTAAGGCTAGCGAAATGGATGCCAAGGGTTTGCTTATCTTCATCGCGTGTTATGGGATTCCCAAGCTGTTCAAGAATGAGGACATTTGGGATTTGGT TCTTGCTTGTAACAATGGCCCCGTTTTTGAGGTTCTCAGATCCTCCCGTGTTCTTGTTAACAGAATTACAGATATCATAGAGCAAATGATCACCAGTGGA ACGAAAGAAAGTATAAAACTCGAGGCTGTCGATGTGGCTTCTAGTTTTGAGATTGATGATAGGTATCCTCCTCAAAAAATTCTAACAGCATACCTTCGGG ATTCCAAAGATGCAATGAAGAAGAGAAGACGAGAAGCAAATAATTCGCCTATATTACAGAAACAAGCAAACGACCGCCATTTGACTGCTCTGAAATCTGT CATGAAGTTCCTCGAGGATCGTAACCTCGATCCTTTGAAGGTCATTCCCGGATGGCAATTCGCAAAGAAGATAAGCAAGTTGGAAGAAGAAAACGTCGAT CTGAACAAAAAAATCCTCGACAAAGCAACGAACAAGAGGAGAGCTGATGTGAACGACATGTCCAATAGAAGGAATCACCAAAACATCAAACGTCCACGAG CTAACGGTCAAGCCTTCCCCCCATTTCCCTCGCCGGGGATTAGGTTGCATGAACCGAACGCCGCCGCGGCAACCTACTTGATGGATAGTCAGCTCCATTA CAATAATTCACTGAGGGTAAACCAACTCCCGGCTTATGGAGGAGGAGGAGAAGCGTATCCTTCATCGACATCGGCGCCCTACTCATCTGCTGCTGGTCGA CCGTGGCCGGAAAATGTTGCAGGTGTCGGAGGAGGAGAGTTGATGCATGGTGCCGGAGTTGGCTACGTGGCTGCTGCTGCATACAATGTCCCATCGTCGA GTGCCTCTGCAGGAACTATAGCTAGTATTCTTCGGCTGCAGGAAGTTGTCGATCGGGCTGGGAAAATCGGTGAGAATAACAACAATAACAACGTGCCATA TGGATTGTACGGATCAACGACTTCGATAGAAGGATTTCCCAGTCTGCAGAATTCGGCATTGCAGCCTAGTGGTACCGCCGCCAATCCAGCAGAGTTGTAT AATTTTGCAGACGGCGTAGTAGATGCCAAGCATAATGGTGGTGTTTGA
AA sequence Show only first row Show all	>Lus10043012 pacid=23168132 polypeptide=Lus10043012 locus=Lus10043012.g ID=Lus10043012.BGIv1.0 annot-version=v1.0 MEKPPVSNPAVPDAAATSPPKSAIAQVEFESESTPQLPLEANGLPIVEFSQHEEQQQSRILDSVEGLSTVSSAIQKFRSRFDELEKHLNFVRIALEVREQ PYGKIDGGTAKPGGGARAELYSLCETMCGRSLRKYIIARLDGVQKLRREVPLALKRARKPAKLVMDCIGGFYLQGSRAYTKDSPMIPGREACILALEFLL MTIEGEVELDDKVRQESIQAAVNWRKRLVMEGGLRKASEMDAKGLLIFIACYGIPKLFKNEDIWDLVLACNNGPVFEVLRSSRVLVNRITDIIEQMITSG TKESIKLEAVDVASSFEIDDRYPPQKILTAYLRDSKDAMKKRRREANNSPILQKQANDRHLTALKSVMKFLEDRNLDPLKVIPGWQFAKKISKLEEENVD LNKKILDKATNKRRADVNDMSNRRNHQNIKRPRANGQAFPPFPSPGIRLHEPNAAAATYLMDSQLHYNNSLRVNQLPAYGGGGEAYPSSTSAPYSSAAGR PWPENVAGVGGGELMHGAGVGYVAAAAYNVPSSSASAGTIASILRLQEVVDRAGKIGENNNNNNVPYGLYGSTTSIEGFPSLQNSALQPSGTAANPAELY NFADGVVDAKHNGGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	0	1
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	5.7	0.7261
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	8.9	0.7587
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10025071 [exp]	11.5	0.7095
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10004521 [exp]	11.8	0.6810
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10009558 [exp]	12.1	0.7287
AT5G20200			nucleoporin-related (.1)		Lus10019408 [exp]	13.9	0.7098
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10038779 [exp]	14.5	0.7205
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	16.9	0.6886
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	17.2	0.6478
AT3G57990			unknown protein		Lus10021042 [exp]	18.4	0.6679

Compare expression of checked genes

Lus10043012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.