Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07400 529 / 2e-172 FHA forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032515 [exp] 1235 / 0 AT5G07400 931 / 0.0 forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111800 [exp] 641 / 0 AT5G07400 881 / 0.0 forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [flax] [poplar] PLD PF06087 [flax] [poplar] Tyr-DNA_phospho Tyrosyl-DNA phosphodiesterase
Representative CDS sequence Show only first row Show all	>Lus10043015 pacid=23168220 polypeptide=Lus10043015 locus=Lus10043015.g ID=Lus10043015.BGIv1.0 annot-version=v1.0 ATGGGCGGCTTAGCTCTTACCAGTAGCGACAGAAGAACCGATGGAGTGGAGGAGGCGGAGGAGAATGTACTATTCCGGCTCTCAGTTTCACCTCCGAGGA AGAGGCAGAAGCAAGTCCGCAAATCAGCACCTCTCCATCTTCCAAGTTTTGACGTCCCTCTGACTTCCGCCGCCTCCGGTTCGATTCTCACCTCAATCCG TCTCCAAGCCGACCGGCCTTACACCCTTCGGCCGAGCGTCCGGCCACTGCGACTTCCTCCTTCACGATTCCCGTGTCAGCAAGCGACACTGCCAGCTTCT GTTCGACGGTCTTCATCGATTGGGGCAGGTGTAGTTAGAGAGCTCTGTGCAGGTGATCAGGTGTTGTTTGTTTGTGGAAATGAAGATATATGTAGCTTCA GAAAACGAGTTGGATTCATGGTTCAGGGCGTTGTGTTGACTGCGGAAGTTGTAGTGGGTGTGGATGGGGTACCCTTTGGGAGGTCCAGAAGGTTAGTTGA GAAGACTGATTCAATGGGTCACTCTCAGAGTTCATTGTCAAGTGGGAGGAGAAACAAGAGGGTCTTTGCTTTTTGTCAAGATGAGATTGTGTCTCCACGC AAAGCTTCTTTAACATTGAGATATGGCGGTATTGCAAGAAGAGCGAAGTCTTTGTTGATCAAATGTGGGACTGAAGATCACAGTGGCAAGCAACATTCCC TGGAGCCTCCGTCTGCTCATGAGAGTAAGCAAATTAGTGAAAGAAAGGAGTGCATACAATGTGTCAGTGTTGGAGATGGCGAAATGCACGAAATAGATGG TATGACAAGACCTTTCCAGATCATTACCGTGAATGCTACTTGTGGTGTTCCTTCGCCGTGTACTGTTAATGAGGACAGTAATTGCTTACTCCAGCCTGTT GTCCCAATGGATACTTCAGAATTTCAAAGTTCTCCCCCTGGGAAGAAATTCTTTCTGAACCGTCTTGAGCGTATGAACCATCCTTCATCTACACATCACA ACACGGTCTCTATGTCAGAACTTCTCTATCCTGTTAACAACATTCTGAGAATATTTAGTGCTACGTTCATAAGTGATGTCCTATGGTTTCCTCCATTTCC CGAAGATATAGCATTCGGTAAAGACCTAAAGAGAAAAGGTATCGGTTGCCATCATCCAAAACTGATCGTCTTGCAAAGAGATGATACCCTTCGTGTTATC ATTACTTCAGCGAATCTAAATGCTAACCAGTGGAATAATGTAACCAACACTGTTTGGTGGCAAGACTTTCCTGCCAGAAGCGCAGCTGATGCCTTTCAAG CACATTGGATTGCCGAGCTGACAAGATACAACTTTGAACGGGCAGTAGGACATATAGTTGCTTCAATACCTGGAATTCATTCTTACAAGGCACAGAATAC TTCTCGGTGTAACCTGGTCTCACCTGTTGTGGGTTCTTTAGGATGGGTTGAAGCTTCTGTAGATGGTTTAAGTCATCTTTTCCATGCCAGATGGAAATGC CGTCAGTGTCTTGTTTCTAATCCTGATCAAGCATCTGAAGGAGATTGCATTCCACTTGGTTTTCTGCCTAGAGGTGTTGCAAAATGGGTGTCACCATCGT GGAATGGTGGATTCTTCTCTTTCTCAGGATATGTTTCTCGTAAAGAAACCCTTGCTGCTGCTTTAGGAGGAAGCAGCATTAGAGTACAGCTGAGTCTATA TGTGACACAAGGACCTCAATTTTCAGAGATGATGAAGCTACTGCAGTTTGAACATGTAGTTGCTCTTAGTTCTCTCATTGCTTCACTACAGAGTTGTACA GGCCTCTGGCGTCTAGAGGAGGTGTTAGGTCAATACAAATGGCCCGAGTCGGAAGAGTGTGATTTCGTCTACGGCGAGTCTCTGCATACTTCTAAATTGA TGAAAGTGGAATTCGCTGCTGGGAAAAAATCTTCGCACGTTGTTGATTCTGAAGAATCTGATCCTGAGTGGGGCTGCTGGAGTGCTAGTCAAGGATTGAG AAATCCGTCCATGCAGATACTTTTCCCTACGATCGACAGAGTAAAGACCGCATATGACGGCGTCGTATCATCAAGGCGCATTCTCTGCTTCTCGGAGAAA ACATGGCAGAAGTTGCAAACTGCAAACATACTTCATGATGCCGTACCGCATCCTCATGAGAGGATCGGACACCCGATGCATGTCAAGGTTGCAAGGAGAC GCTTTAGGAGTGGGACAAGGGAAGAACCGTCTGTTGGGTGGGTGTACTGCGGGTCGCATAATTTCAGCGCTGCAGCTTGGGGACGAACAATCTCGAACTC ATCTTCTTCGAAGCTTCACGTTTGCAACTACGTACTCGGAATAGTCTTCGTCTTTCCTCCATCGGAGCGAGATGGCCGCCGCACGAAGGAGGATAAGGGA AGCTTGGATGACATCGTTCTGCCATTCGCTACACCGGCTCCGAAATACAGGCCCACAGATAGGCCAGCAACAGCTCGTGCCATGAGAGAGGCTATGTGGA AGCTTGCTGATGAAGCAAGACGAGTAGGTGAAGAAGAGTTGGGGAACGTGGAGGAAATAGAGGAAGAGGTTCCTGATGAAGAAGAGGAAGATATGGAGGA GGAGAAGGAAGAAGAGAAGGCGTATGCTGAGATGCTGTGGATTCAGAAGTGTGTATTGGAGGAGGAGAAGGAAGAACAGAAGTAA
AA sequence Show only first row Show all	>Lus10043015 pacid=23168220 polypeptide=Lus10043015 locus=Lus10043015.g ID=Lus10043015.BGIv1.0 annot-version=v1.0 MGGLALTSSDRRTDGVEEAEENVLFRLSVSPPRKRQKQVRKSAPLHLPSFDVPLTSAASGSILTSIRLQADRPYTLRPSVRPLRLPPSRFPCQQATLPAS VRRSSSIGAGVVRELCAGDQVLFVCGNEDICSFRKRVGFMVQGVVLTAEVVVGVDGVPFGRSRRLVEKTDSMGHSQSSLSSGRRNKRVFAFCQDEIVSPR KASLTLRYGGIARRAKSLLIKCGTEDHSGKQHSLEPPSAHESKQISERKECIQCVSVGDGEMHEIDGMTRPFQIITVNATCGVPSPCTVNEDSNCLLQPV VPMDTSEFQSSPPGKKFFLNRLERMNHPSSTHHNTVSMSELLYPVNNILRIFSATFISDVLWFPPFPEDIAFGKDLKRKGIGCHHPKLIVLQRDDTLRVI ITSANLNANQWNNVTNTVWWQDFPARSAADAFQAHWIAELTRYNFERAVGHIVASIPGIHSYKAQNTSRCNLVSPVVGSLGWVEASVDGLSHLFHARWKC RQCLVSNPDQASEGDCIPLGFLPRGVAKWVSPSWNGGFFSFSGYVSRKETLAAALGGSSIRVQLSLYVTQGPQFSEMMKLLQFEHVVALSSLIASLQSCT GLWRLEEVLGQYKWPESEECDFVYGESLHTSKLMKVEFAAGKKSSHVVDSEESDPEWGCWSASQGLRNPSMQILFPTIDRVKTAYDGVVSSRRILCFSEK TWQKLQTANILHDAVPHPHERIGHPMHVKVARRRFRSGTREEPSVGWVYCGSHNFSAAAWGRTISNSSSSKLHVCNYVLGIVFVFPPSERDGRRTKEDKG SLDDIVLPFATPAPKYRPTDRPATARAMREAMWKLADEARRVGEEELGNVEEIEEEVPDEEEEDMEEEKEEEKAYAEMLWIQKCVLEEEKEEQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07400	FHA		forkhead-associated domain-con...		Lus10043015 [exp]	0	1
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10042838 [exp]	4.5	0.7013
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10010069 [exp]	15.1	0.7552
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10042080 [exp]	16.9	0.7308
					Lus10032008 [exp]	53.3	0.6602
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10032760 [exp]	79.0	0.6257
AT5G36930			Disease resistance protein (TI...		Lus10010574 [exp]	107.6	0.6123
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10018727 [exp]	123.1	0.6259
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	164.1	0.6011
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10035547 [exp]	177.8	0.5647
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10035146 [exp]	180.6	0.5762

Compare expression of checked genes

Lus10043015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.