Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56860 374 / 1e-125 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT2G41060 335 / 6e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G15010 186 / 8e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G22090 137 / 3e-36 UBA1A RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G19380 121 / 3e-29 RNA recognition motif (RRM)-containing protein (.1) AT2G22100 116 / 2e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G76460 81 / 8e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G22330 81 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G20880 80 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G07810 81 / 5e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032516 [exp] 513 / 0 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10025418 [exp] 176 / 6e-50 AT3G15010 336 / 8e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10015290 [exp] 170 / 8e-48 AT3G15010 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023817 [exp] 160 / 2e-44 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021035 [exp] 152 / 1e-39 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 87 / 7e-18 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 86 / 8e-18 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002684 [exp] 81 / 1e-16 AT2G46780 228 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10006396 [exp] 81 / 2e-16 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G023800 [exp] 392 / 8e-133 AT3G56860 348 / 1e-115 UBP1-associated protein 2A (.1.2.3.4.5) Potri.006G025600 [exp] 355 / 4e-118 AT3G56860 353 / 2e-117 UBP1-associated protein 2A (.1.2.3.4.5) Potri.001G220600 [exp] 228 / 4e-69 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5) Potri.005G081600 [exp] 222 / 1e-67 AT2G41060 213 / 8e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G377400 [exp] 188 / 3e-54 AT3G15010 342 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G065200 [exp] 184 / 1e-53 AT3G15010 295 / 1e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G055400 [exp] 184 / 2e-53 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G048100 [exp] 167 / 3e-47 AT3G15010 181 / 1e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G190900 [exp] 165 / 1e-46 AT3G15010 179 / 6e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 89 / 9e-19 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10043016 pacid=23168414 polypeptide=Lus10043016 locus=Lus10043016.g ID=Lus10043016.BGIv1.0 annot-version=v1.0 ATGGCGAGGAAGCGAAAGGTTGTTCCTGCTACAGGCGCTGAATCTTCAGGACCGTCGAAGAAACATCAGCTGGAGCAGCAGCAATTGCAACATCAGAAGC AGCTGGAAGAAGAAGATGCGAACAAGATCAACCAGGAAGAGGAGGTAATCGAAGAGGTTGAGGAGGAAGTAGAGGAAGAGGAAGTGGAGGAAGAAGTAGA GGAGGAGGAGGAGGAGGAAGAGGAGGAGGACGGCGGTAAAGAAGATCTGAACAAAGGAAATAAGCAAATTGTTTCTTCTACCGCACCCGCGTCGGTTCCC GATGACGACGATGAAGAGCCGATAGATAAACTTCTGGAGCCGTTTAGCAAGGATCAGCTCGTTAATTTGCTCCGCGAGGCCGCCGAGATCCATCGGGATG TGGCTGATCGCATCCGGAGGATAGCTGATGAGGATCCCGTTCATCGGAAGATCTTCGTCCATGGCTTGGGTTGGGACACAACGGCAGAGACGCTGGTGAG CGCCTTCAAGCAGTACGGAGAGATCGAGGATTGCAAGGCCGTGACCGACAAGGTGTCTGGAAAATCCAAGGGTTACGGTTTCATTCTCTTCAAGAGGCGA AGTGGAGCCAGTAAGGCGCTTAGGGAGCCTCAGAAGAAGATCGGCAGCCGCATGACTGCTTGTCAGCTTGCGTCTATTGGCCCTGTTCAAACGCCACCTC AAGCAGCAGCTCCTGTTACACCGCAATCAGAATACACTCAGAGGAAGATCTACGTGAGTAACGTTGGTTCAGATTTGGATCCCCAAAAGCTGACTAGCTT CTTTGAAAAGTTTGGAGAGATTGAGGAAGGGCCACTTGGGCTGGATAAGAACACCGGGAAGCCGAAAGGTTTCTGTTTGTTTGTCTACAGGAGCCCTGAA AGTGCGAAGAGGGCTCTTGAAGAGCCGCATAAGAACTTCGATGGTCATATTTTACACTGCCAGAAAGCAATTGACGGACCGAAACCTGGAAAAGCTCCGC AACAGAGGCAGCAACACCATCATGCTCAGTCCTCTCATTATCCGAGGAATGATAGCAACACTCCATATGCCGCTGCAGCTCCTAGCCACCTAATGGGCCC CGCAAGTGGAGCTGGAATGGGATTTAACCAGGGAGCTGCTGCAGCACAGGCAATTAACCCTCTTGGACAAGCTCTAACAGCTTTGCTAGCATCACAAGGT GCTGGCTTGGGGGGATTGACTAATGTGTTGGGCTCTTTAGGCACTGCTGCAGTCAACCAGGTTGGTGTGCCACCTCCTGGAATCCAGAGTGCATACAGTA ACCAAACAACTATAAGCCCTGGAGTTATGGGCTATGGAACTCAGACGATGCAGGGTAACTACGGGAATCCGCAGATAGGTCAGGGAGGTTCTGGACGAGG ACAACACGGACAGTATGGAGGTTTAGGCCCTTACATGGGCCACTAG
AA sequence Show only first row Show all	>Lus10043016 pacid=23168414 polypeptide=Lus10043016 locus=Lus10043016.g ID=Lus10043016.BGIv1.0 annot-version=v1.0 MARKRKVVPATGAESSGPSKKHQLEQQQLQHQKQLEEEDANKINQEEEVIEEVEEEVEEEEVEEEVEEEEEEEEEEDGGKEDLNKGNKQIVSSTAPASVP DDDDEEPIDKLLEPFSKDQLVNLLREAAEIHRDVADRIRRIADEDPVHRKIFVHGLGWDTTAETLVSAFKQYGEIEDCKAVTDKVSGKSKGYGFILFKRR SGASKALREPQKKIGSRMTACQLASIGPVQTPPQAAAPVTPQSEYTQRKIYVSNVGSDLDPQKLTSFFEKFGEIEEGPLGLDKNTGKPKGFCLFVYRSPE SAKRALEEPHKNFDGHILHCQKAIDGPKPGKAPQQRQQHHHAQSSHYPRNDSNTPYAAAAPSHLMGPASGAGMGFNQGAAAAQAINPLGQALTALLASQG AGLGGLTNVLGSLGTAAVNQVGVPPPGIQSAYSNQTTISPGVMGYGTQTMQGNYGNPQIGQGGSGRGQHGQYGGLGPYMGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10043016 [exp]	0	1
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10041277 [exp]	2.0	0.8967
AT1G36990			unknown protein		Lus10042697 [exp]	2.0	0.9106
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033458 [exp]	4.0	0.9075
AT1G50410			SNF2 domain-containing protein...		Lus10041008 [exp]	8.8	0.8848
AT4G24500			hydroxyproline-rich glycoprote...		Lus10020639 [exp]	10.1	0.8424
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	11.5	0.9027
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10006766 [exp]	13.1	0.8707
AT3G62200			Putative endonuclease or glyco...		Lus10009982 [exp]	15.5	0.8821
AT3G61520			Pentatricopeptide repeat (PPR)...		Lus10040633 [exp]	16.4	0.8345
AT1G69290			Pentatricopeptide repeat (PPR)...		Lus10036908 [exp]	17.0	0.8852

Compare expression of checked genes

Lus10043016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.