Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47910 1196 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G51060 1183 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT5G07390 1100 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 1038 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT1G09090 964 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT1G64060 929 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT1G19230 813 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT4G11230 793 / 0 Riboflavin synthase-like superfamily protein (.1) AT5G60010 775 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 735 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032517 [exp] 1758 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10022434 [exp] 1560 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10029896 [exp] 1085 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10020644 [exp] 969 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10032308 [exp] 938 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 907 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 890 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10016740 [exp] 850 / 0 AT5G47910 638 / 0.0 respiratory burst oxidase homologue D (.1) Lus10033423 [exp] 841 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111600 [exp] 1425 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.015G109800 [exp] 1410 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.003G159800 [exp] 1261 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.001G070900 [exp] 1219 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.005G026200 [exp] 1100 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.003G133300 [exp] 956 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 946 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 836 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.006G097200 [exp] 771 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 739 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0220 [flax] [poplar] EF_hand PF08414 [flax] [poplar] NADPH_Ox Respiratory burst NADPH oxidase CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10043017 pacid=23168370 polypeptide=Lus10043017 locus=Lus10043017.g ID=Lus10043017.BGIv1.0 annot-version=v1.0 ATGAGTAGAATCGACGACCACCACCGTCTCTCATCGGAGACGGAGCTCGTCGGAGTGGACAGAGTCCTCCCCAACAGCGGCCAGCTGAGTGGACCTCTCA ACAAGCGCGGCGCCGCCGGAGGAAGGAAGACTAAGAGCGCCAGGTTCAACATACCGGAGACCACCTCCGCCTCCGCCTCCACCTCCTCTGATAACCATGG TCAGCAACAGTACGTCGAGATCACCCTCGACCTCAGGGACGATTCCGTCGCCCTCCACAGCGTCAAAGCCGCCAACGGCGCAGACGAGGATCCGGAGATG ACGCTCCTCGCCAAGGACCTCGAGAAGCGGACGGCTTCCAACATAGGCTCCTCCGTGGTCCGAACTGCCTCGGCTAAGATCCGTCAAGTTTCTCAAGAGC TCAGGCGGCTCACTTCCGTCAACAGAAGACCGACGGGTAGACTTGACCGTACAAAGTCAGCGGCGGCTCCTGCTCTGAAAGGTCTCAAGTTCATCAGCAA GGCCGACGGCGGCTCCGGATGGGTTGCCGTGGAAAAGAGGTTCGACCAGATCACTGCTGATTCCCCGGACGGGATGCTTCCCCGTGCTCGCTTCGGAGAA TGTATAGGGATGAAGGAGTCCAAGGAATTTGCGTTGGAGTTGTATGATGCTCTGGCGAGGAAGAGAAACATTCAGAGGGATTCGATCAGCAAGTTTGAGC TAAAGGACTTCTGGGATCAGATCTCTGATCAGAGCTTTGATTCTAGGCTCCAGACTTTCTTTGACATGGTTGATAAAGATGCAGATGGCAGAATTACTGA AGAGGAAGTCAAGGAGATCATCACCCTCAGTGCTTCTGCAAACAGACTCTCGAATATCCAGAAACAAGCAGAGGAGTATGCAGCTTTGATCATGGAAGAA TTGGACCCAGAGCACCATGGATACATCATGATAGAGAACCTAGAAATGCTATTGCTGCAAGGACCAAACCAGTCAGTGAGAGCAGGAGAGAGCAAGAACT TGAGCAAGCTGCTGAGCCAGAAGCTGAAGCCGACGCTGGATGAGAACCCAATAAGTAGATGGCTAAGAAACACAAAGTACTTCCTGTTGGATAACTGGCA GAGAGTTTGGGTGATGGCTTTGTGGATGGGAGTTATGGCTGGTCTGTTTGCTTACAAGTATATCCAGTACCGTGACAGGTCTGCATATGAGGTCATGGGG GTATGTGTATGCTTGGCCAAAGGTGGAGCCGAGACTCTGAAACTAAACATGGCTTTGATTTTGCTCCCCGTTTGCCGGAACACCATTACCTGGCTCCGCA ACAAGACCAAGCTAGGTGTTGCCGTTCCTTTTGACGACAACCTTAACTTCCACAAGGTGATAGCAGTGGCGATAACAATAGGAGTAGGGATCCACGCCAT AGCCCATCTGGCATGCGACTTCCCTCGCCTTCTCGCTGCGGATGAAGAGAAATGGGAACTTATGCAGCCATTCTTCGGAGATCAACCTTCGAGCTACTGG CATTTCGTCAAGTCGAAAGAAGGGGTGACTGGGATTATTATGGTCGTTCTCATGGCAATAGCCTTCACACTTGCCACTCCTTGGTTCAGGCGCAACAAGC TCAACTTGCCACCTTTCCTGAAGAAGCTCACCGGTTTCAATGCCTTCTGGTACTCTCACCATTTGTTTGTCATCGTCTACACTTTGCTTGTTGTCCACGG TTACTACCTGTACCTTACCAAGGAGTGGTACAAGAAGACTACATGGATGTACCTGGCAGTTCCAGTAGTGCTTTACGCCAGTGAGAGGTTGACAAGGGCA CTTAGATCCAGCATCAAGGCAGTTACAATCAAGAAGGTGGCCATTTATCCTGGAAATGTGTTGGCACTTCACATGTCAAAGCCTAATGGGTTCAGATACA AGAGCGGGCAGTACATGTTTGTGAATTGTGCAGCTGTGTCTCCATTTGAATGGCACCCGTTCTCCATAACTTCAGCTCCTGGAGACGATTACTTGAGTAT TCATATTAGAACCCTTGGAGATTGGACAAGGCAGCTGAGAACTGTCTTCCAGGAGGTGTGTCAGCCACCAACAACAGGGAAGAGTGGACTCCTCAGAGCC GATGAATTTCAGGGGAATAACAATCCCGACTTCCCGAGGATACTGATAGACGGACCATACGGAGCACCAGCGCAAGACTACAAGGAATACGAGGTGGTAC TGCTGGTGGGTCTTGGAATCGGAGCAACTCCGATGATCAGCATCCTCAAGGACATTGTGAACAACATGAAGGACGAGGAAGAAGGGGTGAATAATAACGA CAATGAGTTGGAGAACGGAGGGAGGTCCCCGAGGAGGCAGTCTCCGATCAGCCACCACAGTAATAATAATAATGCATCGAGCAGCAAGAGGAAGGACGCG TTCAACACGAGGAGGGCCTATTTCTACTGGGTCACAAGGGAACAAGGCTCATTCGACTGGTTCAAAGGTGTCATGAATGAGGTCGCAGAGGTGGACCGAA ACCACGTCATCGAGCTCCATAACTACTGTACGAGTGTCTATGAAGAAGGTGATGCCCGTTCTGCACTCATCGCCATGCTCCAGTCCCTTCATCACGCCAA GAATGGCCTGGACATTGTATCCGGAACACGTGTCAAGTCCCACTTTGCCAAGCCTAATTGGCGTACAGTGTTCAAGCAAGTCGCTGTTCACCACCCTAAT TCTCGAGTTGGTGTGTTTTACTGTGGGGCACCGGGATTGACGAAGGAGCTGCGAAACTTAGCTCTGGATTTCTCACACAAGACCACCACCAAGTTTGAAT TCCACAAAGAGAACTTCTAA
AA sequence Show only first row Show all	>Lus10043017 pacid=23168370 polypeptide=Lus10043017 locus=Lus10043017.g ID=Lus10043017.BGIv1.0 annot-version=v1.0 MSRIDDHHRLSSETELVGVDRVLPNSGQLSGPLNKRGAAGGRKTKSARFNIPETTSASASTSSDNHGQQQYVEITLDLRDDSVALHSVKAANGADEDPEM TLLAKDLEKRTASNIGSSVVRTASAKIRQVSQELRRLTSVNRRPTGRLDRTKSAAAPALKGLKFISKADGGSGWVAVEKRFDQITADSPDGMLPRARFGE CIGMKESKEFALELYDALARKRNIQRDSISKFELKDFWDQISDQSFDSRLQTFFDMVDKDADGRITEEEVKEIITLSASANRLSNIQKQAEEYAALIMEE LDPEHHGYIMIENLEMLLLQGPNQSVRAGESKNLSKLLSQKLKPTLDENPISRWLRNTKYFLLDNWQRVWVMALWMGVMAGLFAYKYIQYRDRSAYEVMG VCVCLAKGGAETLKLNMALILLPVCRNTITWLRNKTKLGVAVPFDDNLNFHKVIAVAITIGVGIHAIAHLACDFPRLLAADEEKWELMQPFFGDQPSSYW HFVKSKEGVTGIIMVVLMAIAFTLATPWFRRNKLNLPPFLKKLTGFNAFWYSHHLFVIVYTLLVVHGYYLYLTKEWYKKTTWMYLAVPVVLYASERLTRA LRSSIKAVTIKKVAIYPGNVLALHMSKPNGFRYKSGQYMFVNCAAVSPFEWHPFSITSAPGDDYLSIHIRTLGDWTRQLRTVFQEVCQPPTTGKSGLLRA DEFQGNNNPDFPRILIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISILKDIVNNMKDEEEGVNNNDNELENGGRSPRRQSPISHHSNNNNASSSKRKDA FNTRRAYFYWVTREQGSFDWFKGVMNEVAEVDRNHVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGLDIVSGTRVKSHFAKPNWRTVFKQVAVHHPN SRVGVFYCGAPGLTKELRNLALDFSHKTTTKFEFHKENF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10043017 [exp]	0	1
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	1.0	0.9380
AT1G30755			Protein of unknown function (D...		Lus10017259 [exp]	2.4	0.8227
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10012826 [exp]	2.8	0.8293
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10040659 [exp]	7.5	0.7482
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	9.8	0.7498
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	13.7	0.7954
AT5G46910			Transcription factor jumonji (...		Lus10030988 [exp]	14.3	0.7196
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Lus10013193 [exp]	17.1	0.7045
AT3G55430			O-Glycosyl hydrolases family 1...		Lus10040294 [exp]	17.6	0.7951
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	20.4	0.7618

Compare expression of checked genes

Lus10043017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.