Plant FIBer expression Database

Lus10043018 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G07380 375 / 8e-122 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032518
[exp]
954 / 0 AT5G07380 455 / 6e-151 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G109700
[exp]
455 / 9e-153 AT5G07380 637 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10043018 pacid=23167904 polypeptide=Lus10043018 locus=Lus10043018.g ID=Lus10043018.BGIv1.0 annot-version=v1.0
ATGGTGCTACTCTGTTTCGAGTTGAATCTCTGCAGCCTATCGCCTTCCTCACTTGCAGACCTAAAGCAGATGAAAGGCGAATTTGAACAGCTCAAGGTCG
CGTACAGTCCTATAGGAGACTTCCGTCTCCGTGATTTCCACCAGGCGGTTAAGAACTTGCCTACAGACTCTTTTCTGCCTGATATAAGCGATTCCGATAC
TCTTTGTTGCTGCGATATGAAGCTTTCCAGTATACTGAATGATCAAGCGTTTTATTCATGGGGAGGTAGAGATGTCAAGAAGAAACTAATTGTTCTAAGT
TCGTATTTCCCGAGAACCATAGAGGACGCAGAAAAGAAGCTTCTCACGGATGCTTCTTTTCATGGCGTTTCTGTGGAGTTCGTATTGATTGAGCAAAGTT
CAAGTAATCTCAGCTATATGATGGAGAACAAAAGCAGCTTCGTGGGAAGCTTATCTGATCTTCATAATTGCTCTTTCAAAAGTTATCTTCCAGCTTTATT
AATCAAGGTCACCATTTTATATATTGCGGCTTTGGAGGTGGTTTGTGGTCGTTTTGACATAAAAGATTTACAGACCTGTAGGTGTCGTGGCACTTCACAT
CAAGTGGCAAATGAGAGAGTTGAGACTTTTTCTTGTCCAGACACTGCCAGTATTCTTAGAGCATTTGATGTTATCGAGAATTCTATGAGAATTGGAGAGG
AAAGTCCTATAAAGCCCGATTATGTATCTCATCCCGTTGAACTCAACTTCATTCAGAGAATAAACCTGAGCACTTTGAGTGAAGGTGTCCTTGTTGGCTC
CCCATATATTGTAACGCCAGCAGACTATCATAAGATAGGAATATCTTCTGGTGAAGAAGATCGGCCGGAACTTAATGGTCAAGCTTTCCGAAGAATTTGT
CATGCCTTATATTCAATGGATCAAGGATTGATATGTTCATCATACTATAATCTAAAAACTATGGCGGGAGCAGCATTCAACTGTTTTTACATTCTCCTGC
CTTCGGAGAATGGGCCAATGCTTCTCAGGCGTCTGTTAGGCTCAGAAGAAGTCTTGCCTATGCCCGATCTCGATCAAGTGGATAGTTCTTCAATCACTCA
GGATATTCAGAGTTCAATTCAATCCGTATTACAGAAGATTGAATCAAGTGATTACAATCCTCTTCTGTACGAGAGAGGCTTCCATCAAAAGCCCAACTCA
CTCGTAAATGACAGCCTACAGTTGAGGTCAATCCCCCCGCCTAAGGTAGATGCAGGATCACCACACCTGGGCTCAATAAACCCGCCAGATTCGTTGGAGG
CAATCGATTTCTCAGATGGAAAGCTAGAAGCCATAATGCTGGAAGAGGAAAATCTGAAGATAACAGCTAGAGAAGATACAAAGAACACACCCTCAATTTC
GGAAGAATGGATGGTGGTCCTTGAAGCTCCCAAGATACATTCCCTCACCTGTAGCATCTCTAAACCAAGAATTAACGAGGCATCAGATGGCATCAAGCAG
CATACGAAAAGCACACCCTCGATTTCGGAAGAATGGGAGCAGTTGGTGATCCTTGAAGCTTCCAAGATACTGCATTCTCCCATATGTAGTATCTCTAAAC
CAAGGATTAACGAGGCATCAGATGGCATCAAGCAGCTGGACGCCAAAACTTCAAGGATACTGGAAAGACTGGAACTGCCCAGACAGTTAAAAGCAAAGGC
AAGAAATAATTCTCCGACTCCGACGGTCTATGGGAGCAGCAGCATTTTGGAGATAATGAAAAGGCCTCTGGTTCCTTTCCGCCCAATCCAAGCAGCTGGG
CAACCCTCGACCTCAACAAAGTTGATGAAACCCATTTTCCAAAGACCTAAAAGAAAGCCCAGATAA
AA sequence
>Lus10043018 pacid=23167904 polypeptide=Lus10043018 locus=Lus10043018.g ID=Lus10043018.BGIv1.0 annot-version=v1.0
MVLLCFELNLCSLSPSSLADLKQMKGEFEQLKVAYSPIGDFRLRDFHQAVKNLPTDSFLPDISDSDTLCCCDMKLSSILNDQAFYSWGGRDVKKKLIVLS
SYFPRTIEDAEKKLLTDASFHGVSVEFVLIEQSSSNLSYMMENKSSFVGSLSDLHNCSFKSYLPALLIKVTILYIAALEVVCGRFDIKDLQTCRCRGTSH
QVANERVETFSCPDTASILRAFDVIENSMRIGEESPIKPDYVSHPVELNFIQRINLSTLSEGVLVGSPYIVTPADYHKIGISSGEEDRPELNGQAFRRIC
HALYSMDQGLICSSYYNLKTMAGAAFNCFYILLPSENGPMLLRRLLGSEEVLPMPDLDQVDSSSITQDIQSSIQSVLQKIESSDYNPLLYERGFHQKPNS
LVNDSLQLRSIPPPKVDAGSPHLGSINPPDSLEAIDFSDGKLEAIMLEEENLKITAREDTKNTPSISEEWMVVLEAPKIHSLTCSISKPRINEASDGIKQ
HTKSTPSISEEWEQLVILEASKILHSPICSISKPRINEASDGIKQLDAKTSRILERLELPRQLKAKARNNSPTPTVYGSSSILEIMKRPLVPFRPIQAAG
QPSTSTKLMKPIFQRPKRKPR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G07380 unknown protein Lus10043018
[exp]
0 1
AT5G46590 NAC ANAC096 NAC domain containing protein ... Lus10010294
[exp]
9.5 0.8006
AT4G03010 RNI-like superfamily protein (... Lus10033744
[exp]
11.1 0.8742
AT5G48140 Pectin lyase-like superfamily ... Lus10013780
[exp]
13.6 0.8706
AT2G45550 CYP76C4 "cytochrome P450, family 76, s... Lus10008935
[exp]
20.5 0.8694
AT2G27410 B3 Domain of unknown function (DU... Lus10027284
[exp]
23.4 0.8671
AT2G40390 unknown protein Lus10009844
[exp]
23.4 0.8635
AT1G11340 S-locus lectin protein kinase ... Lus10036139
[exp]
26.6 0.8640
AT4G32090 Beta-1,3-N-Acetylglucosaminylt... Lus10012177
[exp]
27.7 0.8519
Lus10019504
[exp]
31.9 0.8051
AT4G28110 MYB ATMYB41 myb domain protein 41 (.1) Lus10033738
[exp]
33.4 0.8555

Lus10043018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.