Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07360 780 / 0 Amidase family protein (.1.2) AT3G25660 95 / 3e-20 Amidase family protein (.1) AT1G08980 60 / 3e-09 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT3G17970 54 / 3e-07 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT4G34880 52 / 9e-07 Amidase family protein (.1) AT5G09420 51 / 2e-06 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT5G64440 50 / 3e-06 ATFAAH fatty acid amide hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032519 [exp] 1038 / 0 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10020781 [exp] 100 / 1e-21 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10007361 [exp] 99 / 2e-21 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10027852 [exp] 89 / 3e-18 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10025066 [exp] 85 / 5e-17 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10002805 [exp] 77 / 9e-15 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10016685 [exp] 71 / 2e-12 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10027853 [exp] 69 / 5e-12 AT4G34880 462 / 4e-159 Amidase family protein (.1) Lus10029941 [exp] 63 / 3e-10 AT1G08980 563 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G109400 [exp] 795 / 0 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.018G086350 [exp] 103 / 7e-23 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.004G169300 [exp] 98 / 3e-21 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.004G171300 [exp] 89 / 2e-18 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.009G130400 [exp] 89 / 2e-18 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.004G171000 [exp] 86 / 1e-17 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.009G130500 [exp] 85 / 5e-17 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.009G130700 [exp] 77 / 1e-14 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.004G169400 [exp] 69 / 3e-12 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.005G070300 [exp] 66 / 4e-11 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10043019 pacid=23168378 polypeptide=Lus10043019 locus=Lus10043019.g ID=Lus10043019.BGIv1.0 annot-version=v1.0 ATGTCACTGGACGTCTGTCATCCGTCTCCGATCGGGTTGACACGTTTTCTCCTCCTTTCCCTCTCTCTCCTAACTTTTTCCTGCTCCCCCATCACCAATT CAGCATGCCTCTGCTCCTCCGCCGCCGCAGGAATCAGCTATTCTTCCACTCCACTTCGCCTTCCAGCTCAGACCACTGACACATTCCAGTGGTCTACGCT AGTAGTTCCACCCATGGACAGTGACAAATTGAGCGGTGGCAAGTGTTCCAACGCTTCCCAACTTAGGGAAGCATTCAAAATATTCGACGCCGGATTCTTC ACTGAAGCAAAGGTGTTGAAAGTTGCTAAAGAGGCCGGTGAGCTCAACTTGCCAATCGCGGAATCCAATAGGAAGTTGGTTGCTTCTGTAAACGGTGGAT TGCAGGATCCTTCTTGTTTGGTCTTCAGTTCGGAGTGGGCTCCCGGTAGTAATGGTGTTGCCGTCAAGAAATTTAACTATCCTTCCGTCTCTGGCGTCAA GAAGAGGCCGGAAAATGACGAGGATATTGCCTTTATGAATATACTTGAATTAGGGGAGCTTCTTCGGGCCAAGCAACTTACATCTGAGCAACTTACCACA ATCTTCCTCAAGAGATTGAAGAGGTACAACGGAGCTCTCGAGTCTGTGATCACTCTTACTGAAGACTTGGCTTATGAGCAAGCTAAAAAGGCTGATGAAT TGTTTTCCAAAGGAGATTACTTGGGACCTCTCCATGGGATCCCTTATGGTTTGAAGGACATTATAGCAGTACCTGGCTATAAAACAACATGGGGTTCAAC AAGTTTCAAGAACCAAGTCCTTGACATCGAAGCCACTGTCTATCAAAGGTTGAAGGCTGCAGGTGCTGTTCTAGTTGCTAAACTCGTTTCGGGATCCCTG GCCTATGATGACATTTGGTTCGGAGGCAGGACCAGAAACCCTTGGAACATTGAGGAGTTCTCCACCGGTTCTTCTGCTGGACCTGCTGCTAGTACCTCGG CTGGAATGGTCCCTTTTGCAATTGGTTCTGAAACAGCCGGCTCAATCACATACCCTGCTGCTCGTTGCGGGGTGACTGCATTGCGCCCGACTTTTGGCAC TGTTGCTCGAACTGGTGTTATGAGCATATCAGAAAGCTTGGATAAGCTTGGCACTTTCTGCAGAAACACCATTGATTGTTCCATAGTTCTCGATACCATT CGTGGGAAAGATTCAGACGATATCTCATCCAGAGATGTTCCCCTTCAAGACCCGTTCTCGGTCGACATTACTAAGCTCACAGTTGGATATCTAGATGATG CCGAAATGGAGGTTGTGGATGTGCTCAAGTCTAAAGGTGTGAACATGGTTCCATTCAATCTAAGCTACACGGTGGATTCCGTCCAAGGAATACTAAATTT CACAATGGACGTCGAGATGTTGGCTCACTTCGACCAGTGGCAGCGCGAAGGGCTGGACGATGTTTATGAAGCTCAGGATCAATGGCCCACAGAGCTCCGC CGTGCCCGAGCGATCTCGGCCGTTGATTACTTCCATTCACAAAGGGCGCGAGGGAAGCTCATAAGGGAAGTGAAAGAAAGCTTTACAGTTGACGCTTTCG TCGGTAACGTGACGGACTGGGAGAAAGTGTGCTTGGGTAATTTGGTTGGTTTGCCGGTTATGGTTGTTCCTACAGGGTTCAAGAATATTCCGGACCCGCC CTCCACCGGTACGAAACGAAGAACCACCATTACCACGGGGATCTACGCTCCTCCTGATCATGACCATATCGCCCTGGCGCTGGCAATGGCATACCAGTCG GTGACGGATCACCATAAGCAGAGGCCACCGATCGATAATCTTGGCCGAGATGATGTGATTCCCGACCCGCCCAAGCACATCATCCCTCCCAGAGTTCTGC GTCTCTGA
AA sequence Show only first row Show all	>Lus10043019 pacid=23168378 polypeptide=Lus10043019 locus=Lus10043019.g ID=Lus10043019.BGIv1.0 annot-version=v1.0 MSLDVCHPSPIGLTRFLLLSLSLLTFSCSPITNSACLCSSAAAGISYSSTPLRLPAQTTDTFQWSTLVVPPMDSDKLSGGKCSNASQLREAFKIFDAGFF TEAKVLKVAKEAGELNLPIAESNRKLVASVNGGLQDPSCLVFSSEWAPGSNGVAVKKFNYPSVSGVKKRPENDEDIAFMNILELGELLRAKQLTSEQLTT IFLKRLKRYNGALESVITLTEDLAYEQAKKADELFSKGDYLGPLHGIPYGLKDIIAVPGYKTTWGSTSFKNQVLDIEATVYQRLKAAGAVLVAKLVSGSL AYDDIWFGGRTRNPWNIEEFSTGSSAGPAASTSAGMVPFAIGSETAGSITYPAARCGVTALRPTFGTVARTGVMSISESLDKLGTFCRNTIDCSIVLDTI RGKDSDDISSRDVPLQDPFSVDITKLTVGYLDDAEMEVVDVLKSKGVNMVPFNLSYTVDSVQGILNFTMDVEMLAHFDQWQREGLDDVYEAQDQWPTELR RARAISAVDYFHSQRARGKLIREVKESFTVDAFVGNVTDWEKVCLGNLVGLPVMVVPTGFKNIPDPPSTGTKRRTTITTGIYAPPDHDHIALALAMAYQS VTDHHKQRPPIDNLGRDDVIPDPPKHIIPPRVLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07360			Amidase family protein (.1.2)		Lus10043019 [exp]	0	1
AT5G57580			Calmodulin-binding protein (.1...		Lus10011248 [exp]	2.2	0.8135
AT5G01720			RNI-like superfamily protein (...		Lus10012214 [exp]	4.0	0.7683
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	7.3	0.7662
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10037562 [exp]	10.1	0.7294
AT5G58940		CRCK1	calmodulin-binding receptor-li...		Lus10040704 [exp]	11.2	0.7248
AT5G01720			RNI-like superfamily protein (...		Lus10001264 [exp]	11.6	0.7783
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10030472 [exp]	24.2	0.7592
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	32.6	0.7367
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013804 [exp]	37.7	0.7003
AT1G62310			transcription factor jumonji (...		Lus10020033 [exp]	43.8	0.7400

Compare expression of checked genes

Lus10043019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.