Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07350 1273 / 0 TSN1, AtTudor1 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2) AT5G61780 1257 / 0 TSN2, AtTudor2 Arabidopsis thaliana TUDOR-SN protein 2, TUDOR-SN protein 2 (.1) AT2G11271 39 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032520 [exp] 1873 / 0 AT5G07350 1359 / 0.0 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111200 [exp] 1461 / 0 AT5G07350 1382 / 0.0 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2) Potri.015G109300 [exp] 1446 / 0 AT5G07350 1377 / 0.0 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00567 [flax] [poplar] TUDOR Tudor domain CL0049 [flax] [poplar] Tudor PF00565 [flax] [poplar] SNase Staphylococcal nuclease homologue
Representative CDS sequence Show only first row Show all	>Lus10043020 pacid=23168185 polypeptide=Lus10043020 locus=Lus10043020.g ID=Lus10043020.BGIv1.0 annot-version=v1.0 ATGCGTGTTGTTTTGGTTACGGGTGGATGTGGCTGTTTGACTGTGGATTGTTTTGGTGGACTATCTGCTGGTGATCGATTACTACTTGGCGGTTGTTTTC TTGGTCTTTTTGTGAAGATCTTAGCTGTTGCGATGGCGACATCAACAGCTGGGGCCACAGGATGGTACAAGGGGAGAGTGAAAGCTGTGACATCTGGTGA CTGTTTGGTCATTATGGCTATTACTACTACCAAGCCCGGACCTCCCCCTGAGAAGACTGTGACTTTGGCTTCTCTTATGGCACCTAAACTGGCTCGTAGA GGTGGGGTTGACGAGCCCTTTGCTTGGGAGAGTAGAGAGTTTCTAAGGAAGCTTTGCATAGGGAAGGAAGTAACTTTCAAGGTTGACTACGCTGTCCCTT CAATTGGAAGGGAATTTGGTACAGTCTTCTTGGGTGACAAAAATGTTGCGTCACTGGTTGTTTCTGAAGGCTGGGCCAGGGTCAGGGAGCAGGGATCACA GAAAGGAGAAGTGAGTCCCTTCCTTGCTGAATTGGTACAGCTTGAAGAACAAGCTAAGCAACAAGGTCTTGGTAAATGGAGTAAGGATCCTGGTGCTGCT GAGGCATCTGTCAGAGATCTGCCCCCTTCTTCAATTGGAGATCCTAGTAACTTGAATGCCGAAGCTTTTATTGCTGAAAACAAAGGTAGGCCGATGGAAT GCATTGTTGAGCAGGTTCGTGATGGCAGTACTATCCGGGTGTATTTGCTCCCAGATTTTCAGTTCGTTCAAGTTTTTGTTGCTGGAATTCAGTCCCCATC AATGGGTAGAAGGCCACCAGTAGAAAATTTCAAAGAGTCAGAAGCAAAACCCAAGGAGTCTAACGGAGATGCCTCTGCGCCCCAGGCTCCCCTGACTACA GCGCAAAGATTTGCAGGTTCTGCAATGGCTGCTGAAGTGGCTCCTGAACCGTTTGCTGTTGAGGCCAAACATTTTACAGAGCTTCGTGTTTTAAATAGAG ACGTTCGTGTTGTATTCGAGGGTCATGACAAGTTTAGCAATTTGATTGGGTCAGTGTATTATCCTGACGGTGACACTGCTAAGGATTTGGGTTTGGAACT TGTGGAAAATGGTTTAGCTAAATATGTTGAGTGGAGCGCCAACATTCTGGAACAGGATGCCAAACAAAAGTTGAGAGCTGCAGAGCTTCAAGCAAAGAAA ATTCGCTTGAAGATTTGGACAAATTTTGTTCCAGATCCTAAAAAATCAAAAGCAATCCATGACCAGAAATTCTCGGGAAAGGTTGTGGAGGTTGTAAGCG GTGATTGCATCATTGTAGCCGATGATTCTGTCCCCTTTGGACAGCTGGCTGAAAGGCGAGTCTATCTTTCAAGTATTAAGTGTCCAAAAATGGGGAATCC TCGTAGAAATGAGATTCCTGAACCATATGCCCCAGAAGCAAAAGAGTTCTTGAGAACACGCCTCATCGGCCAACAGGTCAATGTGCAAATGGAGTACTCT TGGAACCCTGATGCATCTGGAGGTGCGGCTGGTGGTGAGTCGAGAGTAATGGATTTTGGGTCCATCTTCCTTCCATCTGCTACCAAGGGAGACGGAGCAC CAGAAGCTACACCAAATGCTTCTGTTCAACAAGCCGGTATCAATGTGGCTGAGTTGATTCTCTCTCGTGGACTTGGTTCTGTTACTAAACATAGAGACTT TGAGGAGAGGTCAGACTTCTATGATACCCTTCTTGCTGCTGAAACACGGGCCAGGAATGGAAAGAAAGGGATTCATTCCACGAAGCAGCCTTCTTCCACG CACGTAACAGACCTCACTACGGACGCGACATCAGCCAAGAAAGCCAGAGATTTCTTGCCGTTCCTGCAACGTGGTAGAAGGATTACTGCTATAGTGGAAT ATGTGCTTAGTGGTCATCGTTTCAAACTGTTGGTTCCGAAGGAAACTTGCAGCATTGCGTTTTCTTTCTCTGGTGTTAGGTGCCCTGGTCGTAACGAACC TTATGCAGATGAAGCGATTGCTTTCATGAGGAGGAGGTTAATGCAGAGAGAAATAGAGATTGAAGTGGAGACCGTAGATAGAACTAAAACTTTCCTGGGA TCCTTGTGGGAGTCGAGAACTAACATGGCAACCGTTCTTTTGGAAGCTGGCCTGGCAAAACTGCAGATGTCCTTTGGTAGGGACAGGATTGCTGATGCCC ATCTTCTTGAGCGGGCGGAGGAATCTGCCAAGAAACAGAAACTGAAAATATGGGAGAATTATGTTGAAGGGGAAGTGGTCACCAATGGCGCTCCAACCAT TGAGGGCAAGCAGAAAGAAGTTCTGAAGGTAGTGGTTACCGAAGTTTTGGGAGGTGGTAAGTTCTACGTCCAGACTGTTGGGGATCAGAGAGTAGCATCT ATTCAGCAACAGCTCGCATCCCTTAAAATCCAGGAAGCTCCTGTCATTGGTGCTTTTAATCCTAAGAAGGGTGATATTGTACTGGCACAGTTCAGTGCAG ATAACTCATGGAATCGAGCTATGATTGTGAATGTCCCACGTGGAGGAGTTGTCCAATCAACAAAGGATAAGTTCGAGGTGTTCTACATTGACTACGGAAA CCAGGAAGAGGTTCCGTACGGACATTTGCGACCTATTGACCCTGCAGTCTCTGTAGCCCCTGGACTTGCACAGCTATGCAGCCTGGCATACATCAAGGTC CCGGACTTGGACTCTGACTGTGGCCCAGAGGCAGGTGAGTTTTTGAGCGGTAGCACACTTAACAGTGTGAAAGAGTTCAGGGCAAAGATAGAGGAGAAGG ATGTTTCTGGAGGAAAAGTTAAAGGACAGGGAACTGGTCCAGTCCTTATCGTAACTCTCGTGGCCGTGGATGCTGAAATAAGCGTAAATGCTGCCCTGGT TCAGGAGGGACTTGCTAGGATAGAGAAGAAGAGGAAGTGGGATCCAAGGGAGAGACAAGTAGCCCTTGAGAACTTGGAGAAGTTCCAGGACGAAGCACGA TCGGGCAGGAGGGGAATGTGGGTCTATGGAGATGTGCAGTCGGATGACGAGGAAGAAGGCGGTCCTCGCAAAGCTCCAGGCGGTGGTGGACGCAGATGA
AA sequence Show only first row Show all	>Lus10043020 pacid=23168185 polypeptide=Lus10043020 locus=Lus10043020.g ID=Lus10043020.BGIv1.0 annot-version=v1.0 MRVVLVTGGCGCLTVDCFGGLSAGDRLLLGGCFLGLFVKILAVAMATSTAGATGWYKGRVKAVTSGDCLVIMAITTTKPGPPPEKTVTLASLMAPKLARR GGVDEPFAWESREFLRKLCIGKEVTFKVDYAVPSIGREFGTVFLGDKNVASLVVSEGWARVREQGSQKGEVSPFLAELVQLEEQAKQQGLGKWSKDPGAA EASVRDLPPSSIGDPSNLNAEAFIAENKGRPMECIVEQVRDGSTIRVYLLPDFQFVQVFVAGIQSPSMGRRPPVENFKESEAKPKESNGDASAPQAPLTT AQRFAGSAMAAEVAPEPFAVEAKHFTELRVLNRDVRVVFEGHDKFSNLIGSVYYPDGDTAKDLGLELVENGLAKYVEWSANILEQDAKQKLRAAELQAKK IRLKIWTNFVPDPKKSKAIHDQKFSGKVVEVVSGDCIIVADDSVPFGQLAERRVYLSSIKCPKMGNPRRNEIPEPYAPEAKEFLRTRLIGQQVNVQMEYS WNPDASGGAAGGESRVMDFGSIFLPSATKGDGAPEATPNASVQQAGINVAELILSRGLGSVTKHRDFEERSDFYDTLLAAETRARNGKKGIHSTKQPSST HVTDLTTDATSAKKARDFLPFLQRGRRITAIVEYVLSGHRFKLLVPKETCSIAFSFSGVRCPGRNEPYADEAIAFMRRRLMQREIEIEVETVDRTKTFLG SLWESRTNMATVLLEAGLAKLQMSFGRDRIADAHLLERAEESAKKQKLKIWENYVEGEVVTNGAPTIEGKQKEVLKVVVTEVLGGGKFYVQTVGDQRVAS IQQQLASLKIQEAPVIGAFNPKKGDIVLAQFSADNSWNRAMIVNVPRGGVVQSTKDKFEVFYIDYGNQEEVPYGHLRPIDPAVSVAPGLAQLCSLAYIKV PDLDSDCGPEAGEFLSGSTLNSVKEFRAKIEEKDVSGGKVKGQGTGPVLIVTLVAVDAEISVNAALVQEGLARIEKKRKWDPRERQVALENLEKFQDEAR SGRRGMWVYGDVQSDDEEEGGPRKAPGGGGRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10043020 [exp]	0	1
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10032520 [exp]	2.4	0.9615
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10037403 [exp]	3.0	0.9653
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	3.5	0.9583
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10008647 [exp]	3.9	0.9604
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10005047 [exp]	3.9	0.9433
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10041519 [exp]	6.5	0.9540
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10018003 [exp]	7.7	0.9577
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	10.9	0.9506
AT3G44330			unknown protein		Lus10005197 [exp]	11.6	0.9053
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10019766 [exp]	14.1	0.9220

Compare expression of checked genes

Lus10043020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.