Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51050 727 / 0 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G07320 708 / 0 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT5G61810 675 / 0 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT4G01100 204 / 4e-61 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G53940 168 / 2e-47 Mitochondrial substrate carrier family protein (.1) AT3G55640 158 / 4e-44 Mitochondrial substrate carrier family protein (.1) AT4G32400 159 / 1e-43 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT2G37890 152 / 8e-42 Mitochondrial substrate carrier family protein (.1) AT4G26180 146 / 9e-40 Mitochondrial substrate carrier family protein (.1) AT1G14560 127 / 1e-32 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016736 [exp] 837 / 0 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 824 / 0 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 702 / 0 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032523 [exp] 269 / 2e-88 AT5G07320 204 / 3e-64 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 199 / 4e-59 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 196 / 5e-58 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 194 / 1e-57 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 194 / 3e-57 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10021497 [exp] 162 / 4e-45 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G110700 [exp] 793 / 0 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 793 / 0 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 204 / 2e-61 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 203 / 1e-60 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 201 / 7e-60 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 197 / 3e-58 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.016G103300 [exp] 165 / 2e-46 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 161 / 6e-45 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 158 / 5e-44 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 158 / 5e-44 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10043022 pacid=23168054 polypeptide=Lus10043022 locus=Lus10043022.g ID=Lus10043022.BGIv1.0 annot-version=v1.0 ATGTCTCACGCCGTGGAACGCCAGCAAGGGATGCCTAAGATGGAAGCCAATAAATCAATTAAGAAGGCGGCGGCTGCGGCGGTGACCATGGACCACGTTC TGCTGGCTCTCAGGGAGACCAAGGAAGAGAGGGATGTTAGGATTAGGAGCTTGTTCAGTTTCTTCGATCTGGCCAATTCTGGCTACTTGGATTACACCCA GATTGAGACTGGTCTGTCCGCTCTTCAGATTCCGCCCGAGTATAAATATGCCAAGGATTTGTTGAAGGTCTGTGACGCTAATAAAGATGGGAGGGTTGAT TACGTGGAGTTCAAGAGGTACATGGATGCTAAAGAGCTGGAGCTGTACAGGATTTTCCAGGCTATTGATGTTGAACACAGCGGCTGCATTTTGCCCGAGG AGCTCTGGGATGCTCTTGTTACCGCTGGTATTCAAATTGACGATGAGGAGCTTGCCCGTTTTGTAGAGCATGTCGATAAAGACAACGATGGGATTATAAC CTTCGAGGAATGGAGAGATTTTCTTTTGCTCTATCCACACGAAGCTACCATCGAGAACATATATCATTATTGGGAAAGAATGTGTCTCGTAGATATTGGA GAACATGCTGTTATTCCTGAAGGCATCAGCAAACAGGTTCACAGGAGTAAATATTTTATTGCAGGAGGAATAGCTGGGGCAACTTCACGTACCGCAACTG CTCCTCTTGACCGCCTCAAAGTTGTTTTGCAAGTTCAGACCACTCGTGCATCTATTGTACCTGCTGTAAAGAAGATATGGAAGGCTGATGGTTTGCTTGG GTTTTTCCGTGGTAACGGGCTGAACGTGGTAAAGGTTGCTCCTGAAAGTGCTATCAAGTTTTATGCGTATGAGATGTTGAAAAATGTCATTAAAGATTTG AAAGGGGAAGAGGACGCCGATATAGGTACATCTGGTAGACTTCTGGCTGGCGGAATGGCCGGTGCGGTAGCGCAAACTGCTGTCTATCCGATGGATCTCG TGAAAACTCGATTACAGACCCATGCATGTGAAGGTGGAAAGGCACCGAAATTGGGGACCCTAACTAGGGACATATGGGTGCACGAAGGGCCTCGAGCCTT TTATAAGGGTCTTGTGCCCTCCCTTATTGGTATCATTCCTTATGCTGGCATTGATCTTGCTGCTTATGAGACCTTAAAGGAAATGTCCAAGACATATCTT CTGAATGATAGTGAAGCTGGCCCTCTTGTGCAACTAGGATGTGGCACAATCTCGGGAGCAGCGGGAGCAACTTGTGTCTACCCTTTGCAGGTCATTCGAA CCAGAATGCAAGCTCAACAAGCAAATGCTGCAGCTCCATACAAGGGGATGACTGATGTGTTCTTGAGAACACTTGAGAAAGAAGGATACAGAGGGTTCTA CAAAGGACTGTTTCCAAATCTGCTAAAGGTGGTACCAGCAGCAAGTATAACGTATATGGTTTATGAAGCTATGAAGAAACATCTACATCTTGAGTGA
AA sequence Show only first row Show all	>Lus10043022 pacid=23168054 polypeptide=Lus10043022 locus=Lus10043022.g ID=Lus10043022.BGIv1.0 annot-version=v1.0 MSHAVERQQGMPKMEANKSIKKAAAAAVTMDHVLLALRETKEERDVRIRSLFSFFDLANSGYLDYTQIETGLSALQIPPEYKYAKDLLKVCDANKDGRVD YVEFKRYMDAKELELYRIFQAIDVEHSGCILPEELWDALVTAGIQIDDEELARFVEHVDKDNDGIITFEEWRDFLLLYPHEATIENIYHYWERMCLVDIG EHAVIPEGISKQVHRSKYFIAGGIAGATSRTATAPLDRLKVVLQVQTTRASIVPAVKKIWKADGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIKDL KGEEDADIGTSGRLLAGGMAGAVAQTAVYPMDLVKTRLQTHACEGGKAPKLGTLTRDIWVHEGPRAFYKGLVPSLIGIIPYAGIDLAAYETLKEMSKTYL LNDSEAGPLVQLGCGTISGAAGATCVYPLQVIRTRMQAQQANAAAPYKGMTDVFLRTLEKEGYRGFYKGLFPNLLKVVPAASITYMVYEAMKKHLHLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10043022 [exp]	0	1
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	2.0	0.8974
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10024866 [exp]	2.4	0.8887
AT2G46420			Plant protein 1589 of unknown ...		Lus10030264 [exp]	3.9	0.8860
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	5.9	0.8701
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	6.3	0.8760
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10013692 [exp]	7.5	0.8653
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10005319 [exp]	8.0	0.8604
AT5G51150			Mitochondrial import inner mem...		Lus10032508 [exp]	9.4	0.8499
AT5G59020			Protein of unknown function (D...		Lus10016455 [exp]	9.8	0.8571
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	9.9	0.8596

Compare expression of checked genes

Lus10043022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.