Plant FIBer expression Database

Lus10043024 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51040 194 / 2e-63 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032526
[exp]
346 / 1e-122 AT5G51040 210 / 8e-69 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G108300
[exp]
243 / 5e-83 AT5G51040 225 / 1e-75 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03937 Sdh5 Flavinator of succinate dehydrogenase
Representative CDS sequence
>Lus10043024 pacid=23167916 polypeptide=Lus10043024 locus=Lus10043024.g ID=Lus10043024.BGIv1.0 annot-version=v1.0
ATGGCGAGCTTAAGAAGGTCTTTGGCAACTCTCCGCCGCCTCCTCAACTCCAAGCCGGCGACTAATCGTACCTCTATCTCGCCAATTCCTTCCCAGTCCG
TTTCCCTACGGGAATATGGTTTCTTCTTCTCTCGTTATTCGACTCTCAACAGCGATGATTCTGGATCGAATCGTATCGATCTCTCCAACGACGAAAGCAG
ACGCCGTCTGTGTAACAGGTTGCTGTATAGAAGCAGGCAGAGAGGATACCTGGAATTGGATTTAGTGCTTGGCAAATGGGTTGGGGAGCACGTTCATTCC
ATGGACGAAACCAGGATTAAAGCTCTCGTTCATGTCCTCGATTTGGAAAACCCTGATCTGTGGAAGTGGCTAACTGGGCAGGAGCAAGCCCCTGAGACTG
TAGGCCAAAATCAGGTGTTCTGCGAGATACGTGATGAGGTGATGAACAATCTCAACAGCCATGCTGCTCCTGGTACGAGAGCGATTCCGGGACAGCCATG
GGTTCGAGGATGGGATGACATCAGGAAGAGTGCAGGGGCACCTGTCGCTGGGAATCAGTAG
AA sequence
>Lus10043024 pacid=23167916 polypeptide=Lus10043024 locus=Lus10043024.g ID=Lus10043024.BGIv1.0 annot-version=v1.0
MASLRRSLATLRRLLNSKPATNRTSISPIPSQSVSLREYGFFFSRYSTLNSDDSGSNRIDLSNDESRRRLCNRLLYRSRQRGYLELDLVLGKWVGEHVHS
MDETRIKALVHVLDLENPDLWKWLTGQEQAPETVGQNQVFCEIRDEVMNNLNSHAAPGTRAIPGQPWVRGWDDIRKSAGAPVAGNQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G51040 unknown protein Lus10043024
[exp]
0 1
AT4G18700 ATWL4, CIPK12, ... SNF1-RELATED PROTEIN KINASE 3.... Lus10025397
[exp]
2.0 0.8845
AT4G22240 Plastid-lipid associated prote... Lus10001099
[exp]
2.4 0.8637
AT5G40010 ASD, AATP1 ATPase-in-Seed-Development, AA... Lus10032188
[exp]
3.5 0.8686
AT1G77490 TAPX thylakoidal ascorbate peroxida... Lus10025680
[exp]
4.0 0.8554
AT2G26520 unknown protein Lus10020993
[exp]
4.6 0.8057
AT3G26040 HXXXD-type acyl-transferase fa... Lus10030751
[exp]
4.8 0.8032
AT3G10870 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ES... Lus10034253
[exp]
4.9 0.8371
AT5G19980 GONST4 golgi nucleotide sugar transpo... Lus10018311
[exp]
5.5 0.8414
AT5G61640 PMSR1, ATMSRA1 ARABIDOPSIS THALIANA METHIONIN... Lus10033039
[exp]
5.5 0.8469
AT5G47850 CCR4 CRINKLY4 related 4 (.1) Lus10029170
[exp]
6.0 0.8324

Lus10043024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.