Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25880 849 / 0 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT2G19900 837 / 0 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT1G79750 830 / 0 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT5G11670 821 / 0 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT2G13560 395 / 2e-129 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT4G00570 392 / 2e-128 NAD-ME2 NAD-dependent malic enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011125 [exp] 950 / 0 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 937 / 0 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10025823 [exp] 851 / 0 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10014149 [exp] 775 / 0 AT1G79750 951 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10037561 [exp] 769 / 0 AT1G79750 949 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10005484 [exp] 743 / 0 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10034963 [exp] 739 / 0 AT1G79750 714 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10005483 [exp] 721 / 0 AT5G11670 793 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) Lus10006036 [exp] 582 / 0 AT5G11670 696 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046600 [exp] 884 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.006G236500 [exp] 874 / 0 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G086700 [exp] 870 / 0 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.003G049300 [exp] 844 / 0 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 843 / 0 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.002G156000 [exp] 398 / 5e-131 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 392 / 1e-128 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.002G135300 [exp] 382 / 9e-125 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.014G043700 [exp] 375 / 9e-122 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10043025 pacid=23168111 polypeptide=Lus10043025 locus=Lus10043025.g ID=Lus10043025.BGIv1.0 annot-version=v1.0 ATGTTGTGCACTAATAAGTCAGCCGATCAAACTCATCTCGTGTTGTGGGAGTACTTGATGGGGGGCGTTTCCACTGTGTCACGATTTGCTTGGGAGACGG GCGCGCTAGCATGGTTGTACCATGAGCTCGGTAAGGCTACTCGAGTATTTCTCTACTTCCAGACTTGGATTCATGAGTATTTCCCTAGTATTCGTGTTGC TAGAGTAGTGTGCCAGGAGCGTGGCGAGGAAGAGGCTTTAGTTGGGCGGTGGAGCAGTGGCGAGCAGTCAGAGCGGTCCTACGAGTTCATGCACCGCAGC GGATACTCTCTGCTCAGAGATCCTCGTCATAACAAGGGACTCGCCTTCACTGAGAATGAGAGGGATGCGCACTACTTGCGTGGCCTTCTCCCACCCGTGG TTCTCTCGCAGCAGCTTCAGGAGAAGAAGTTGATGAACTCCATTAGACAGTATCAGCTTCCAATCCAGAAGTATATGGCTATGATGGAACTTGAGGAGAG AAATGAAAGGCTGTTTTACAAGCTTCTCATTGACAATGTTGAGGAATTGCTGCCAGTTGTGTACACTCCCACTGTTGGGGAAGCTTGCCAGAAGTATGGC AGCATATTCAGAAGGCCTCAGGGTCTATACATCAGCTTGAAAGAGAAGGGGAGAGTTCTTGATGTATTGAAAAACTGGCCTGAGAGAAATATTCAAGTCA TTGTCGTGACTGATGGTGAAAGAATTTTGGGTCTAGGAGATCTCGGGACTCAGGGGATGGGTATTCCTGTTGGAAAGTTGTCTCTTTACACAGCACTTGG AGGAATTCGTCCTTCTGCATGTTTGCCTATAACTATCGATGTTGGTACCAATAACGAGTCATTGTTGAATGATGAATTCTATATTGGACTCAGACAAAGA AGGGCTAGGGGCCAGGAATATTCTGAACTTCTTCATGAATTCATGACAGCAGTAAAGCAGATCTACGGAGAAAAAGTTCTGATTCAGTATGAAGATTTCG CCAACCACAATGCTTTTGAGCTGCTTGAGAAGTATAAAACAACTCATCTTGTCTTCAATGATGATATTCAGGGGACGGCATCCGTGGTCCTTTCAGGAGT TGTTGCGTCATTGAAATTGCTTGGGGGAACACTTGCCGATCACAAGTTCCTCTTCCTTGGTGCTGGAGAAGCTGGAACTGGCATAGCTGATCTTATAGCT CTCGAGATGTCGAAAAGGACAAATACTCCACTGGATGAGTGTCGCAAGAGGATCTACTTGGTTGATTCAAAGGGTTTAATTGTCAAGTCCCGGTTAGAAT CACTGCAACACTTCAAGAAGCCTTGGGCTCATGACCATGAGCCTGTCAAGAACCTATTGGATGCTGTCCACGCACTCAGACCAACAGTACTGATTGGAGC ATCGGGCATGGGGAAAACATTCACAAAGGAAGTTATTGAAGCCATGTCTACTTTCAACGAGAAACCTCTAATCATGGCGCTCTCCAACCCAACTTCACAA GCCGAGTGTACAGCGGAAGAAGCCTACGCCTGGAGTAAGGGCAAAGCCATATTTGCTAGTGGAAGTCCTTTCGATCCAGTTGAATACGAGGGCAAGGTGT TTGTTCCTGGGCAGGGAAACAACGCATACATCTTCCCAGGATTCGGGTTAGGCGTGGTTATGTCTGGTGCTATTCGTGTCCATGATGACATGCTTCTCGC AGCTTCTGAAGCTTTGGCGGAGCAAGTGACGGATGCAGAATACGAGAAGGGGCTAATCTACCCACCATTCTCGAAGATCAGAAAGATATCCGCTGAGATT GCTGCTAAGGTTGCTGCCAAGGCTTACGAACTTGGGTTGGCGAGCCGGCTGCCTCGTCCAGCAGACCTGGTGAAGTATGCAGAGAGCTGCATGTACAGCC CTGTGTACAGAAACTTCAGGTGA
AA sequence Show only first row Show all	>Lus10043025 pacid=23168111 polypeptide=Lus10043025 locus=Lus10043025.g ID=Lus10043025.BGIv1.0 annot-version=v1.0 MLCTNKSADQTHLVLWEYLMGGVSTVSRFAWETGALAWLYHELGKATRVFLYFQTWIHEYFPSIRVARVVCQERGEEEALVGRWSSGEQSERSYEFMHRS GYSLLRDPRHNKGLAFTENERDAHYLRGLLPPVVLSQQLQEKKLMNSIRQYQLPIQKYMAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYG SIFRRPQGLYISLKEKGRVLDVLKNWPERNIQVIVVTDGERILGLGDLGTQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNESLLNDEFYIGLRQR RARGQEYSELLHEFMTAVKQIYGEKVLIQYEDFANHNAFELLEKYKTTHLVFNDDIQGTASVVLSGVVASLKLLGGTLADHKFLFLGAGEAGTGIADLIA LEMSKRTNTPLDECRKRIYLVDSKGLIVKSRLESLQHFKKPWAHDHEPVKNLLDAVHALRPTVLIGASGMGKTFTKEVIEAMSTFNEKPLIMALSNPTSQ AECTAEEAYAWSKGKAIFASGSPFDPVEYEGKVFVPGQGNNAYIFPGFGLGVVMSGAIRVHDDMLLAASEALAEQVTDAEYEKGLIYPPFSKIRKISAEI AAKVAAKAYELGLASRLPRPADLVKYAESCMYSPVYRNFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10043025 [exp]	0	1
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10011125 [exp]	1.0	0.9236
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	6.5	0.9175
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	6.8	0.9217
AT5G18150			Methyltransferase-related prot...		Lus10020287 [exp]	13.8	0.9098
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10029495 [exp]	18.8	0.9087
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	19.5	0.9122
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10015680 [exp]	22.4	0.8974
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	23.0	0.8954
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10039381 [exp]	24.4	0.8909
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	26.6	0.8981

Compare expression of checked genes

Lus10043025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.