Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35190 407 / 2e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G46490 359 / 1e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G46480 296 / 2e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G46500 275 / 1e-91 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16770 245 / 6e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16765 205 / 2e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G50210 114 / 7e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G49630 112 / 4e-28 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G49620 98 / 7e-23 DIN11 DARK INDUCIBLE 11, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 94 / 2e-21 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011126 [exp] 596 / 0 AT1G35190 415 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10012963 [exp] 502 / 1e-179 AT1G35190 498 / 7e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10034964 [exp] 501 / 2e-179 AT1G35190 493 / 9e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004746 [exp] 235 / 5e-75 AT4G16770 370 / 7e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10007820 [exp] 185 / 6e-56 AT4G16770 291 / 4e-98 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021002 [exp] 100 / 9e-24 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10023602 [exp] 79 / 2e-16 AT3G11180 158 / 5e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004387 [exp] 80 / 3e-16 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10023851 [exp] 79 / 5e-16 AT3G19000 474 / 9e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086900 [exp] 488 / 2e-174 AT1G35190 478 / 6e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.018G086800 [exp] 478 / 4e-170 AT1G35190 451 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.003G079600 [exp] 254 / 1e-82 AT4G16770 359 / 1e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G047100 [exp] 110 / 1e-27 AT3G50210 503 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.004G146100 [exp] 89 / 2e-19 AT3G19000 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G146000 [exp] 87 / 8e-19 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G107600 [exp] 81 / 7e-17 AT3G19000 459 / 4e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.006G101100 [exp] 79 / 3e-16 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 77 / 1e-15 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150300 [exp] 76 / 4e-15 AT4G10500 327 / 4e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10043026 pacid=23168010 polypeptide=Lus10043026 locus=Lus10043026.g ID=Lus10043026.BGIv1.0 annot-version=v1.0 ATGGCGAATCAGCAGCAGCAACAGCAAGGAAATCGCACCGCCGTAACTTCACTGAATTGCATTGATCTCTCCACCCCGGTCGACTCTCCTAATTCCGTCT CCTTGCTCAAACAGCAGGCGTGCCTGGATTGTGGGTTTTTCTACTTGGTCAATCATGGGATAAGCCAAGAGTTCATGGTGGAAGTTTTTGCTCAGAGCAA GAAGTTCTTCGAATTGCCACTGGTTGAGAAGATGAAAGTTCTTAGGAACGAGAAGCATAGAGGGTACACTCCAGAGCTGGACGAGCTTTTGGATCCTGGA AATCAACTTCATGGAGATTATAAGGAGGGTTACTATATAGGATTAGAAATTCCTGAAGATGACCCTGCAGCCAAAAATCCATTCCATGGTCCTAACGTTT GGCCATCATCAGACCTTTTGCCTGGTTGGAGGGAAACCATGGAAAAGTTTCATCAGCAAGCTCTAGAGGTAGCGCGAAAAGTTGCGAGGATTATAGCTCT TGCGCTTGATTTAGAAGCTGATTTCTTCGACAAACCGGAGATTCTTGGTGACCAGCCCATTGCACTAATGCGATTGCTGCGCTATGGAGGTCAAGTTTCT GATCCCATGAAGGGATTATATGGAGCTGGGGCCCATTCTGACTATGGTTTGATTACCCTCCTTGCCACAGATGAAGTCTATGGTCTCCAAATATGTAGGA ATAAGAGTGGTGAACCTCAAGTATGGGAATATGTACCACCAATGCAAGGGTTGAAGATACTGATGTATGTTCTCTTTCGTGTCGAACAGAGCTTTCGTGG TAAATCTGGGGGACATGTTAGAGCGGTGGAGCAACTGTGTGTTCAAGTAAATATTCATGCTACTAGCTTTGCAGCATTTCCCAAGTCGACATTACATAGA GTTATAGGGAATGGTCAAGAGAGATATTCCATTGCATACTTCGTGGAGCCGAATTATGATTGTCTAGTCGAATGCTTGTCAACATGTAAATGGGAGAAAT ATCCACCCAAGTTCCCCCCAGTCAAATATGGAGAATACTTGGGGCAACGCTACAAGGACACCCATGCTGATTTGAGGGTTTACAGCCAGAAGCAGCCATA G
AA sequence Show only first row Show all	>Lus10043026 pacid=23168010 polypeptide=Lus10043026 locus=Lus10043026.g ID=Lus10043026.BGIv1.0 annot-version=v1.0 MANQQQQQQGNRTAVTSLNCIDLSTPVDSPNSVSLLKQQACLDCGFFYLVNHGISQEFMVEVFAQSKKFFELPLVEKMKVLRNEKHRGYTPELDELLDPG NQLHGDYKEGYYIGLEIPEDDPAAKNPFHGPNVWPSSDLLPGWRETMEKFHQQALEVARKVARIIALALDLEADFFDKPEILGDQPIALMRLLRYGGQVS DPMKGLYGAGAHSDYGLITLLATDEVYGLQICRNKSGEPQVWEYVPPMQGLKILMYVLFRVEQSFRGKSGGHVRAVEQLCVQVNIHATSFAAFPKSTLHR VIGNGQERYSIAYFVEPNYDCLVECLSTCKWEKYPPKFPPVKYGEYLGQRYKDTHADLRVYSQKQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10043026 [exp]	0	1
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	1.7	0.9831
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	3.0	0.9790
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	3.7	0.9792
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10030879 [exp]	4.2	0.9758
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10018383 [exp]	4.5	0.9737
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10028311 [exp]	5.1	0.9704
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10027045 [exp]	5.7	0.9747
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	6.7	0.9694
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	7.4	0.9765
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	7.5	0.9781

Compare expression of checked genes

Lus10043026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.