Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26400 56 / 5e-10 RING/U-box superfamily protein (.1.2) AT5G64920 53 / 5e-09 CIP8 COP1-interacting protein 8 (.1) AT5G08139 52 / 7e-09 RING/U-box superfamily protein (.1) AT3G30460 51 / 7e-09 RING/U-box superfamily protein (.1) AT5G01980 52 / 9e-09 RING/U-box superfamily protein (.1) AT3G60080 52 / 1e-08 RING/U-box superfamily protein (.1) AT5G15820 52 / 1e-08 RING/U-box superfamily protein (.1) AT1G22500 52 / 1e-08 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT5G60820 51 / 2e-08 RING/U-box superfamily protein (.1) AT1G55530 51 / 2e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013397 [exp] 56 / 6e-10 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10020258 [exp] 56 / 8e-10 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10002637 [exp] 54 / 2e-09 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10031422 [exp] 53 / 6e-09 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10024629 [exp] 50 / 1e-08 AT5G05530 54 / 2e-09 RING/U-box superfamily protein (.1) Lus10021524 [exp] 51 / 2e-08 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10004712 [exp] 51 / 3e-08 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021628 [exp] 50 / 3e-08 AT1G74410 250 / 5e-84 RING/U-box superfamily protein (.1) Lus10032265 [exp] 49 / 4e-08 AT3G19950 54 / 2e-09 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G164516 [exp] 84 / 4e-22 AT3G46620 63 / 6e-13 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G112100 [exp] 57 / 2e-10 AT5G01980 293 / 1e-92 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 57 / 3e-10 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.009G034800 [exp] 56 / 3e-10 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G243300 [exp] 56 / 4e-10 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G141600 [exp] 56 / 6e-10 AT5G01980 226 / 1e-69 RING/U-box superfamily protein (.1) Potri.010G201300 [exp] 53 / 4e-09 AT2G39720 240 / 2e-75 RING-H2 finger C2A (.1) Potri.005G160900 [exp] 53 / 5e-09 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.012G065300 [exp] 53 / 5e-09 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.005G062400 [exp] 52 / 5e-09 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10043027 pacid=23167930 polypeptide=Lus10043027 locus=Lus10043027.g ID=Lus10043027.BGIv1.0 annot-version=v1.0 ATGATGAGCAGCAGCAGCACGGCGGATGCGAAGGAGGCGTTCGGGAGCTGCCGAACGGGCACCTCTGGAGGAGGTGCGGGAAGTGGGTGTTTCGACCTCG ACGAGGCGCTGGACGCGCCGTGGAGTTTAGGACGACAAATGGAGGAATCGGGGAGTGTAGTGGACAATATGCCGACCGTGGTGTTGAATATCGGAGAGAC GATCTGTTGTTCAGTGTGTTTAGAAGGCGCGCGGGTGGGGACCTCCTCCGACGCCGGAGGAGGAGCGTGGAAAAAGGTTCCGTGCTGTGGACACGTGTAC CATGCAGAATGCATCTCCTCCTGGCTTTCCCACCGCGATTCCTGTCCTCTTTGCCGCTTCAATATCGTCCGCCGTTAG
AA sequence Show only first row Show all	>Lus10043027 pacid=23167930 polypeptide=Lus10043027 locus=Lus10043027.g ID=Lus10043027.BGIv1.0 annot-version=v1.0 MMSSSSTADAKEAFGSCRTGTSGGGAGSGCFDLDEALDAPWSLGRQMEESGSVVDNMPTVVLNIGETICCSVCLEGARVGTSSDAGGGAWKKVPCCGHVY HAECISSWLSHRDSCPLCRFNIVRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	0	1
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	1.4	0.9852
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	1.4	0.9820
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	1.7	0.9800
AT1G60010			unknown protein		Lus10030835 [exp]	2.0	0.9764
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10012923 [exp]	4.2	0.9675
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10037232 [exp]	5.0	0.9763
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10034296 [exp]	6.6	0.9508
AT5G46060			Protein of unknown function, D...		Lus10013943 [exp]	7.1	0.9671
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10004225 [exp]	8.4	0.9639
AT2G37030			SAUR-like auxin-responsive pro...		Lus10013808 [exp]	9.1	0.9523

Compare expression of checked genes

Lus10043027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.