Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15450 323 / 2e-108 Senescence/dehydration-associated protein-related (.1) AT3G21600 297 / 2e-98 Senescence/dehydration-associated protein-related (.1.2) AT4G35985 182 / 2e-53 Senescence/dehydration-associated protein-related (.1) AT2G17840 169 / 2e-48 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) AT3G51250 165 / 2e-46 Senescence/dehydration-associated protein-related (.1) AT3G21590 77 / 2e-16 Senescence/dehydration-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011127 [exp] 558 / 0 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10012957 [exp] 298 / 3e-99 AT4G15450 321 / 1e-108 Senescence/dehydration-associated protein-related (.1) Lus10014132 [exp] 191 / 2e-56 AT2G17840 476 / 1e-166 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10027840 [exp] 192 / 3e-55 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10028439 [exp] 171 / 7e-49 AT3G51250 520 / 0.0 Senescence/dehydration-associated protein-related (.1) Lus10034970 [exp] 163 / 1e-47 AT4G15450 178 / 1e-53 Senescence/dehydration-associated protein-related (.1) Lus10034499 [exp] 141 / 5e-40 AT2G17840 306 / 2e-103 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10005067 [exp] 143 / 1e-38 AT2G17840 459 / 5e-160 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10041892 [exp] 123 / 7e-32 AT3G51250 358 / 9e-122 Senescence/dehydration-associated protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G087500 [exp] 408 / 6e-142 AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) Potri.006G164748 [exp] 326 / 4e-110 AT4G15450 332 / 3e-112 Senescence/dehydration-associated protein-related (.1) Potri.004G174100 [exp] 197 / 4e-59 AT2G17840 472 / 7e-165 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.009G133500 [exp] 184 / 4e-54 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.005G111600 [exp] 174 / 4e-50 AT2G17840 491 / 3e-172 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [flax] [poplar] Senescence Senescence-associated protein
Representative CDS sequence Show only first row Show all	>Lus10043028 pacid=23168161 polypeptide=Lus10043028 locus=Lus10043028.g ID=Lus10043028.BGIv1.0 annot-version=v1.0 ATGGGCTGTTTGAAACACAAACGAAGAAGCTCAACGATGAGCAGTTCCACCACCATATCAGAACCAGGTGCTTCTTTGCTGCCGGCAAGCAGAAACCTGA AGCAGGAGACTCTACTGCAAATCCCTTCATGCACTCTGCATCTAATGGAAGCAGGGGAATCCATGGAGCTAGCCAGGGGAGACTTCACTCTGTTCCAGGT GGTGGACCAAGACGCAGAAGACGACAGCTGCTTATCGCTGGCCACCGTAGTCAGTGTCGGCGGGGGAGAAGTACAGTGGCCGCTGACGAAAGACGAGCCG GTGGTAAAGCTGGACGATCTGCATTACTTGTACTCCCTCCCCATGAAAGAAGGGGACCCTCTTAGCTACGGAATCACTTTTCCACAAGAATATGGGCAGA GATTAGGTGCGTTGGATGGTTTTCTTGGGAAACATTGTTGCTTCTCGGCGGGGAAAGTAGGCGGTGGTGGTTTGAAGTGGGAAGAGTTTGCTCCAAAGGT TGATGATTATAACGGTGTTTTGGGGAGGGCGATTGCTGGAGGGACTGGATATGTTGTCAAGGGCATTTTCACATGTAGCAATGCCTACACCAACCAGGTA CTAAAGGGAGGTGAGATGATTCAGACAAGCGCATCAGAAGGTAGCAGCAGCAGTTGTAAAAGACTGGGAAAGAAGAAGGAGAAGAAGACTAAATTGAACA AAAGCCTGAAGCGGGTGAGGAAGCTGTCCAAGATGACAGAAAAGCTGAGCAAGAAAATGCTGGACGGAGTTGGGATCGCCACAGGTTCAGTAATGAAGCC GGTGGTCAATTCCAAAGCAGGAAAGAAGTTCATCTCTATGGTCCCTGGTGAAGTCCTCTTGGCCTCCCTCGACGCCGTCAATAAGATTCTAGATGCTGCG GAAGCTGCAGAGAGGCAAGCCGCATCGGCCACCTCAAAGGCGACGACGGGGATGATAAGTAACCGGTTTGGGGAAGCGGCGGGAGAGGCAGCAGAGGATG TGTTTGCAACTGCAGGGCACTGTGCATGTACTGCTTGGAATATATTCAAGATCCGCAAGGCCATTAATCCAGCTTCCTCTGGTGTGCTCGTCAAGACTGC AGCCAAGGGCGTTCTCAGAAAATCTTAG
AA sequence Show only first row Show all	>Lus10043028 pacid=23168161 polypeptide=Lus10043028 locus=Lus10043028.g ID=Lus10043028.BGIv1.0 annot-version=v1.0 MGCLKHKRRSSTMSSSTTISEPGASLLPASRNLKQETLLQIPSCTLHLMEAGESMELARGDFTLFQVVDQDAEDDSCLSLATVVSVGGGEVQWPLTKDEP VVKLDDLHYLYSLPMKEGDPLSYGITFPQEYGQRLGALDGFLGKHCCFSAGKVGGGGLKWEEFAPKVDDYNGVLGRAIAGGTGYVVKGIFTCSNAYTNQV LKGGEMIQTSASEGSSSSCKRLGKKKEKKTKLNKSLKRVRKLSKMTEKLSKKMLDGVGIATGSVMKPVVNSKAGKKFISMVPGEVLLASLDAVNKILDAA EAAERQAASATSKATTGMISNRFGEAAGEAAEDVFATAGHCACTAWNIFKIRKAINPASSGVLVKTAAKGVLRKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15450			Senescence/dehydration-associa...		Lus10043028 [exp]	0	1
AT4G15450			Senescence/dehydration-associa...		Lus10011127 [exp]	2.4	0.8484
AT5G50290			unknown protein		Lus10042105 [exp]	11.5	0.8482
AT5G50290			unknown protein		Lus10001236 [exp]	14.0	0.8330
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Lus10042284 [exp]	14.1	0.8414
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10026020 [exp]	19.9	0.8216
AT5G02140			Pathogenesis-related thaumatin...		Lus10003962 [exp]	25.4	0.8131
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10040258 [exp]	25.5	0.8048
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Lus10034400 [exp]	27.0	0.7442
					Lus10007688 [exp]	29.1	0.7113
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10042456 [exp]	31.7	0.8153

Compare expression of checked genes

Lus10043028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.