Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37410 252 / 8e-85 ATTIM17-2 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2) AT1G20350 240 / 2e-80 ATTIM17-1 translocase inner membrane subunit 17-1 (.1) AT5G11690 133 / 2e-39 ATTIM17-3 ARABIDOPSIS THALIANA TRANSLOCASE INNER MEMBRANE SUBUNIT 17-3, translocase inner membrane subunit 17-3 (.1) AT3G10110 41 / 0.0002 MEE67 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT1G18320 40 / 0.0002 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011128 [exp] 373 / 1e-132 AT2G37410 287 / 1e-98 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G164980 [exp] 290 / 4e-100 AT2G37410 234 / 3e-78 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2) Potri.018G087900 [exp] 289 / 1e-99 AT2G37410 227 / 3e-75 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2) Potri.008G176500 [exp] 279 / 6e-96 AT2G37410 228 / 1e-75 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2) Potri.001G281200 [exp] 40 / 0.0003 AT3G10110 205 / 4e-68 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.009G076400 [exp] 39 / 0.0009 AT3G10110 194 / 1e-63 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.012G004600 [exp] 40 / 0.001 AT5G24650 262 / 2e-87 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10043029 pacid=23168386 polypeptide=Lus10043029 locus=Lus10043029.g ID=Lus10043029.BGIv1.0 annot-version=v1.0 ATGGGCACGCCGGAGACATCCAGGGAGCCATGCCCAGACCGCATCCTCGATGACATCGGCGGTGCATTCGGCATGGGCGCAGTCGGCGGCTCCGCCTTCC ACTTCATCAAAGGCGTCTACAACTCCCCCACCGGAACTCGCTTCATGGGTGGAACGCAGGCCGTCCGGATGAACGCACCTCGAGTCGGTGGAAGCTTCGC CGTCTGGGGCGGCCTCTTCTCTGCTTTCGATTGCACGATGGTCTACGTCCGCCAGAAAGAAGATCCATGGAACTCAATCTTTGCTGGCGCCGCCACCGGT GGGTTCCTAGCTATGCGTCAAGGTCTCGGCGCCTCCGCTCGATCTGCCGCCTTTGGCGGGGTTCTGTTGGCTCTGATCGAAGGCGCTGGGATCATGCTCA ATAAGGTCATGAGTCCGCCGCAGAACATGCCCGTGATGATCGATGAACCTGCCCCTGCTATGGCCGGTGGACCGGGTTTGCCAATCGGGTTTCCAGGCCA ACCGCAAGCCCAGTCTATGCCGCAGGAGCTGCCTTCACAGGGTCAAACGGAATCGGGTTCATGGTTTAGTGGTGGGTGGTTTGGCGGAGGGAAGAAGAAT GAAGCTGCTGGTTCCTCGAGTAGCGGAAGCAAGACGGAAGTTCTTGAGAGCTTTGACGCACCTCCGGTCCCAAGTTTTGAATACAAGTGA
AA sequence Show only first row Show all	>Lus10043029 pacid=23168386 polypeptide=Lus10043029 locus=Lus10043029.g ID=Lus10043029.BGIv1.0 annot-version=v1.0 MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGVYNSPTGTRFMGGTQAVRMNAPRVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIFAGAATG GFLAMRQGLGASARSAAFGGVLLALIEGAGIMLNKVMSPPQNMPVMIDEPAPAMAGGPGLPIGFPGQPQAQSMPQELPSQGQTESGSWFSGGWFGGGKKN EAAGSSSSGSKTEVLESFDAPPVPSFEYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10043029 [exp]	0	1
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	2.4	0.8724
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	3.5	0.8710
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	6.9	0.8401
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009677 [exp]	11.0	0.8618
AT4G09670			Oxidoreductase family protein ...		Lus10013633 [exp]	11.8	0.8554
AT4G35540			zinc ion binding;transcription...		Lus10014847 [exp]	11.9	0.7955
AT4G17060		FIP2	FRIGIDA interacting protein 2 ...		Lus10001004 [exp]	12.0	0.8282
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10032905 [exp]	13.3	0.8253
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10013415 [exp]	15.7	0.8184
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	16.4	0.8575

Compare expression of checked genes

Lus10043029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.