Plant FIBer expression Database

Lus10043030 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19870 465 / 6e-159 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
AT4G38020 47 / 2e-05 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011129
[exp]
943 / 0 AT2G19870 472 / 1e-161 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Lus10012771
[exp]
47 / 1e-05 AT4G15520 348 / 2e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Lus10034004
[exp]
44 / 0.0001 AT4G15520 346 / 1e-122 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G087800
[exp]
555 / 0 AT2G19870 499 / 8e-171 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Potri.005G147600
[exp]
53 / 3e-07 AT4G38020 335 / 5e-114 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Potri.008G198200
[exp]
45 / 7e-05 AT4G15520 347 / 9e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0101 PELOTA PF08032 SpoU_sub_bind RNA 2'-O ribose methyltransferase substrate binding
CL0098 SPOUT PF00588 SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence
>Lus10043030 pacid=23168288 polypeptide=Lus10043030 locus=Lus10043030.g ID=Lus10043030.BGIv1.0 annot-version=v1.0
ATGTGTAGTAATCTAGCAAGAAGCCAGGCATTTCCATTTGCGATTCGGTTTTCCTCTAAATCCATATGCTTCCCCCAATTCCACCCCTCTAAACCCTCCT
TAAACCCTACTTTCATCACATACGCATTGTATTATCTTGATTCCAACTTTGTCCCGTCTTCCACTAGACTTAGAGTTATTAGGAGCTTTTCCACTTCACA
ACAGAGGAATGTCGGTGCTGTTAGAACTGGAAAGTCGCTTCCTTGGTTGAACTCTAACTCTAGCAAAGCTAAGGATTCAGGGAAGCGTACCGTTTCTCCT
TGGGAGAAATCACTCCAGAGTTTAGAGAAAGTTAGTGGAGACACAACCCGCCATGATAATGAGAGAGAGAAATTGAAGAGGAGTAGTTCCTCATCATATA
AGAAAGAAGGCGGCAAAAGGGTAGAGAACAGTATGTCAGATAGAAGGACTATGCACTCTGCTGTAGATGCATATGGACGAAAACCGACTAGTGGAAGGAA
GAATTTTGATGATTACCCTGACAAGGACGATAATCTTGAGCAAGAAGAACCATCCGAGGCTGCTGTGGATACTCCTAGATGGGATAAAATGAAGCCTAGG
AGAGGAGGATTGTCATGCTCGAATGAGAAACGCGAGTTCCAGAGGTGGAATAGCCAGGATAACTGGGGGAGAAAGACTTGGAAAGAAGCTACTGAATCAA
CTCTACCGAAAATCGTGGGCCAAGTTGTTTATGGAGTTGGTCCTGTTCTGGCTGCATTATCCGCTGGAAGAAGAGAGCTTTACGCGTTGTATGTTCAGCA
AGGGCTGGACTTGAGCAGCAGCAATGCCAGGAAGAAGAAAGACAAGAAAGGGTTCGAGAAGGTGTTAAAGATGGCCGAGAAAATTGGATTAACCATAACC
AATGTTTCCAAGCATGATTTGAATATGATTGCTGATAACAGGCCTCATCAGGGCCTTATACTGGATGCTTCTCCATTGGAGATGGTGCACATCAAGGAAT
TGGAAACTGTTTCCCCCGGTGAGGAAGAAAACAACTCCTCTCTTTGGGTTGCTCTAGATGAAGTTACGGATCCTCAGAATTTAGGGGCCATCATTCGGTC
TGCTTACTTCTTCGGTGCCTCGGGAGTGGTGTTATGTGCTAAGAATTCAGCTCCGCTGAGCGGTGTGGTGAGCAAGGCAAGTGCAGGATCTCTGGAACTC
ATGGAGCTTCGGTATTGTAAGAACATGATGCAGTTTTTGGTATTGTCGGCTGAGAATGGATGGCGAGTTATTGGTGGTTCGGTTTCTTCGAGAGCGGTTC
CTTTGGATGGAATCGCGCCTGGCGAACCAACTATCCTTGTTTTGGGCAGCGAGGGCACTGGATTGAGGCCTTTGGTTGAGAGATCGTGTACTCAGCTGGT
TCGTATCCCGGGGAACGTTCCTGTGGATATAGCTGCTGGCGGGGGGAGTGATGCTATGGATGGTGGCGAAGAGACGAATGACCTTCAACATTCGAGCAAA
GAGTTCCAGTCGTTTATGGCAGTGGAGAGCTTGAATGTTAGTGTCGCAGCTGGCGTTATGCTTCACCAATTGATTGTGAAACAGACGAAAGATGCTGATA
CTGTCTGA
AA sequence
>Lus10043030 pacid=23168288 polypeptide=Lus10043030 locus=Lus10043030.g ID=Lus10043030.BGIv1.0 annot-version=v1.0
MCSNLARSQAFPFAIRFSSKSICFPQFHPSKPSLNPTFITYALYYLDSNFVPSSTRLRVIRSFSTSQQRNVGAVRTGKSLPWLNSNSSKAKDSGKRTVSP
WEKSLQSLEKVSGDTTRHDNEREKLKRSSSSSYKKEGGKRVENSMSDRRTMHSAVDAYGRKPTSGRKNFDDYPDKDDNLEQEEPSEAAVDTPRWDKMKPR
RGGLSCSNEKREFQRWNSQDNWGRKTWKEATESTLPKIVGQVVYGVGPVLAALSAGRRELYALYVQQGLDLSSSNARKKKDKKGFEKVLKMAEKIGLTIT
NVSKHDLNMIADNRPHQGLILDASPLEMVHIKELETVSPGEEENNSSLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLEL
MELRYCKNMMQFLVLSAENGWRVIGGSVSSRAVPLDGIAPGEPTILVLGSEGTGLRPLVERSCTQLVRIPGNVPVDIAAGGGSDAMDGGEETNDLQHSSK
EFQSFMAVESLNVSVAAGVMLHQLIVKQTKDADTV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G19870 tRNA/rRNA methyltransferase (S... Lus10043030
[exp]
0 1
AT4G28590 MRL7 Mesophyll-cell RNAi Library li... Lus10022899
[exp]
1.7 0.9281
AT2G28000 Cpn60alpha1, SL... SCHLEPPERLESS, chaperonin-60al... Lus10041329
[exp]
2.4 0.9260
AT2G44640 unknown protein Lus10043347
[exp]
3.5 0.9188
AT5G08540 unknown protein Lus10017363
[exp]
5.5 0.9101
AT5G59500 protein C-terminal S-isoprenyl... Lus10004974
[exp]
5.8 0.8762
AT3G25890 AP2_ERF CRF11 cytokinin response factor 11, ... Lus10035018
[exp]
6.0 0.8971
AT2G19870 tRNA/rRNA methyltransferase (S... Lus10011129
[exp]
6.0 0.9114
AT3G13470 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn6... Lus10013404
[exp]
6.5 0.8997
AT2G04030 Hsp88.1, AtHsp9... HEAT SHOCK PROTEIN 88.1, EMBRY... Lus10036843
[exp]
6.9 0.8863
AT5G52920 PKP-BETA1, PKP2... PLASTIDIAL PYRUVATE KINASE 2, ... Lus10039316
[exp]
7.4 0.8866

Lus10043030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.