Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48390 706 / 0 ATZIP4 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011130 [exp] 1134 / 0 AT5G48390 1125 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175350 [exp] 731 / 0 AT5G48390 1254 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G143300 [exp] 49 / 1e-05 AT2G06210 1507 / 0.0 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08631 [flax] [poplar] SPO22 Meiosis protein SPO22/ZIP4 like
Representative CDS sequence Show only first row Show all	>Lus10043031 pacid=23168217 polypeptide=Lus10043031 locus=Lus10043031.g ID=Lus10043031.BGIv1.0 annot-version=v1.0 ATGAGGATCGCCGAGATCGGCTCTCAGGATATCCCGGAGCCCAAGTTCGACTCTCCTCCACCGGACGATAACCACAACCTTCTCCTCTCACGCGTTGAGT CTCTAATCCGACAAACGGAAGAAATCTCTGCCTCCCCCACCACTCACAACTCCGGAATTCCAGATGATCTCTCCGCCCATCTCCGCAAAACCCTAACTCA TTTCCCTCAACTCCTCCCTCTCCCCAACTCCGTCAAGCTCCAAATCTGGAAACTCAGCTACCGCCTCTGGAATGCTTGCGTTGATCTCTCCAATTCTCTT ACCATCCGACTCTCCGCTTCCTCCTCAGCAGAAACCCAAGCTAAACTGCGTCATGTCGCGGCGGATATGCTCCACTTTGCCGGCGATGTCGAAGGAGTTC CGTCTCCGGCCATCAAGTGTGCCTCCTTCTATCAGAAGACAGGCGTCATCTGGCACGATCTCGGTAAGCTCGATCTCGCTTCTGCTTGTTTGGAAACCGC GACGGAGATCCTCGCCAAAGTTGATGTAACCAAAGTATTCGATCCCTGCGAGAGAAAGCTGCTTTTGGAAGTAAACTTAGCCAGGTCGCGAGTTTCCTGG AAGCTATCCGATCGGAATCTCGCGGTGATGCTCCTTAACCGTGCCAAATCTCTGCTGTTTGGGTCTCCAGATAACTTTAAATTGCTGGCCAATCAGTACA TGGCGTTTGGTAAGGCCACGTTATCGCTTAACGACGGCAACGATTTTAACGAAGCGCTGAAGCTGATGAACGAAGCTCTCGATCTGTGCGAGAAAGCATC AGGTGCAGCCCGGACACGGGAACAAGCATCGCAACTCAGGGATATGAAAGTGAAAGCGCTTCGGTTCATCTCTGCCGTCCATTTACAGAAAGGCGAGTTC GAGAGCGTGATCAAATGCGTTAAGGTGTTGAGAGAAGGCGGGGGAGACAAAGCTGACCATCATGCTAGTCTCCCTGTGCTGGCAATGAAGGCCTGGTTAG GATTGGGGCGGTATGAGGAAGCGGAGAAGGAGCTGAGGGGTATGGTTACGAATAAGGGAGTTCCTGAAGCTGTTTGGGTATCGGCTATTGAGGCCTATTT TGAGTCAGCTGGTACTGCTGGGGCAGCGACTGCCAAGGCAGTGTTCATGGGGCTTCTAGATAGGTTCAATGTCAGCGCCAATGCAGCAGTCAGGTTGGCC CATAGAGTAATTGGTGATGGTGTTGGTGGGGAAGGATCAAAGGTGAGAACCCAAGTGGTCTTGGAGTTGGTTTCTGATGATAGAGTAGTGGCTCTCTTTA CCAGTCAGAAAGCCGTCAAGGAGACAGCGGCTATGCATGCCATTCTTTGGAACTGTGCTGCGGATCACTTCAGAATGAAAGAGTACAAGATGAGTGCAGA GATGTTTGAAAAATCGTTGCTCTATGTTCCACATGAGATAGACAGAAGAATACTCCGAGCTAAGGGGTTTAGAGTGTTGTGTCTCTGCTACCTTGGCCTC TCTCAACTTGATAGAGCTGAAGAGTATATCACTGAGGCCGAAAAGCTTGATCCCAACATAGTTTCCGCTTTTCTCAAGCTGAAGGTCTTACTGCAAAAGA ACGACGAAAGTGGAGCTATCGATCAGATCCAAACGATAAGATCCTGTCTTGATTTCACTCCAGATTTTCTGTCTCTAGCAGCTCACGAGGCCATTGCTTC CCGTGCTCTCCGAGTTGCTGCTTCCTGTTTGTCAAATCTCCTGGAGTGTTCAAGTCCTCAAGTACATGAAATGGGGAAACTCGAGGGCTTCCGAGTTAGG GATTGA
AA sequence Show only first row Show all	>Lus10043031 pacid=23168217 polypeptide=Lus10043031 locus=Lus10043031.g ID=Lus10043031.BGIv1.0 annot-version=v1.0 MRIAEIGSQDIPEPKFDSPPPDDNHNLLLSRVESLIRQTEEISASPTTHNSGIPDDLSAHLRKTLTHFPQLLPLPNSVKLQIWKLSYRLWNACVDLSNSL TIRLSASSSAETQAKLRHVAADMLHFAGDVEGVPSPAIKCASFYQKTGVIWHDLGKLDLASACLETATEILAKVDVTKVFDPCERKLLLEVNLARSRVSW KLSDRNLAVMLLNRAKSLLFGSPDNFKLLANQYMAFGKATLSLNDGNDFNEALKLMNEALDLCEKASGAARTREQASQLRDMKVKALRFISAVHLQKGEF ESVIKCVKVLREGGGDKADHHASLPVLAMKAWLGLGRYEEAEKELRGMVTNKGVPEAVWVSAIEAYFESAGTAGAATAKAVFMGLLDRFNVSANAAVRLA HRVIGDGVGGEGSKVRTQVVLELVSDDRVVALFTSQKAVKETAAMHAILWNCAADHFRMKEYKMSAEMFEKSLLYVPHEIDRRILRAKGFRVLCLCYLGL SQLDRAEEYITEAEKLDPNIVSAFLKLKVLLQKNDESGAIDQIQTIRSCLDFTPDFLSLAAHEAIASRALRVAASCLSNLLECSSPQVHEMGKLEGFRVR D

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Lus10043031 [exp]	0	1
AT1G21740			Protein of unknown function (D...		Lus10042722 [exp]	34.9	0.6851
					Lus10004928 [exp]	206.3	0.5988

Compare expression of checked genes

Lus10043031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.