Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48390 245 / 5e-75 ATZIP4 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011130 [exp] 493 / 1e-169 AT5G48390 1125 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175350 [exp] 305 / 3e-97 AT5G48390 1254 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043032 pacid=23168187 polypeptide=Lus10043032 locus=Lus10043032.g ID=Lus10043032.BGIv1.0 annot-version=v1.0 ATGATGGTCTGCAAAGCTTTGATACTAACTGTGTCTTCAGTGATAGCGTCCGAGAATCAAAAGCAGACTGCATTGTCGACTACTGATCTAAAACAAGCAG TGGAACTGCTAGATAGAGCAGGAAAGATGCTAGGTGTAATTTCAGGAGGAACCAACTTCGACCCAGACAAGGTAAAAGAAATGGAAGCAGAGATGTTGTT CATGTACACCTTCAATGCCTACCATATGCATGGAAGGCTATATGACAAAGGAAGCCAGCATCAACAACTCGAGCTAGTAAAGGCATTTGCAAGGTCAAAA GCGTGCAACCCAATGGACCTTTCCGAGATCGGAATCGCAGCATCGGAAGGTCCGTGGAGTAATCCTGAGGTAGCCATATTTGCTCTGAAAGAATCACTCT CGACCCTCCTGTCTCTTCCTTCCCCGGACTACGCTGACATTGCTGTGATGATAAGAAGACTAATAAAGGTGATGAGTAGTGTCGAGAAGAGTGATTCGGA TGCGGTACACGAAATGTACAAGCAAGCGTATAGGATAATGGTTGGGTTGAAGGAAGGGGAGTACCCCGCGGAAGAAGGGAAATGGTTGGTAACTACTGCT TGGAATAGGGCAGTGGTGCCGGTTAAGATTGGGCAAGTTGATTTGGCCAACAAGTGGATGAGCGTTGGTTTGGAGCTTGCTAGCAAGGTTCAAGGAATGG AGAGTTACAGGACATTCATGGAGGATTACGTGTCTGGGTTTTTGAAGAAACTCCCTTTGCTGAATGCTGGTTAG
AA sequence Show only first row Show all	>Lus10043032 pacid=23168187 polypeptide=Lus10043032 locus=Lus10043032.g ID=Lus10043032.BGIv1.0 annot-version=v1.0 MMVCKALILTVSSVIASENQKQTALSTTDLKQAVELLDRAGKMLGVISGGTNFDPDKVKEMEAEMLFMYTFNAYHMHGRLYDKGSQHQQLELVKAFARSK ACNPMDLSEIGIAASEGPWSNPEVAIFALKESLSTLLSLPSPDYADIAVMIRRLIKVMSSVEKSDSDAVHEMYKQAYRIMVGLKEGEYPAEEGKWLVTTA WNRAVVPVKIGQVDLANKWMSVGLELASKVQGMESYRTFMEDYVSGFLKKLPLLNAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Lus10043032 [exp]	0	1
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10001298 [exp]	4.2	0.6175
AT5G20690			Leucine-rich repeat protein ki...		Lus10005175 [exp]	15.8	0.5598
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10021821 [exp]	56.0	0.5049
					Lus10024839 [exp]	59.6	0.5248
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Lus10009659 [exp]	64.5	0.4792
AT5G04550			Protein of unknown function (D...		Lus10002840 [exp]	72.8	0.5104
AT2G29060	GRAS		GRAS family transcription fact...		Lus10037752 [exp]	92.9	0.4862
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	93.6	0.4957
AT5G55125			Ribosomal protein L31 (.1.2)		Lus10000695 [exp]	118.5	0.4498
AT5G01150			Protein of unknown function (D...		Lus10002340 [exp]	140.3	0.4567

Compare expression of checked genes

Lus10043032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.