Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16490 169 / 2e-48 IQD26 IQ-domain 26 (.1) AT4G29150 116 / 8e-29 IQD25 IQ-domain 25 (.1) AT1G51960 86 / 2e-18 IQD27 IQ-domain 27 (.1) AT4G14750 55 / 4e-08 IQD19 IQ-domain 19 (.1) AT1G01110 51 / 1e-06 IQD18 IQ-domain 18 (.1.2) AT4G00820 50 / 1e-06 IQD17 IQ-domain 17 (.1) AT5G62070 50 / 2e-06 IQD23 IQ-domain 23 (.1) AT5G13460 50 / 2e-06 IQD11 IQ-domain 11 (.1) AT5G07240 49 / 3e-06 IQD24 IQ-domain 24 (.1) AT1G72670 48 / 7e-06 IQD8 IQ-domain 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011131 [exp] 491 / 8e-173 AT3G16490 223 / 2e-68 IQ-domain 26 (.1) Lus10021904 [exp] 70 / 1e-12 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10006613 [exp] 56 / 4e-08 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10041188 [exp] 54 / 9e-08 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10005760 [exp] 51 / 1e-06 AT5G07240 219 / 3e-67 IQ-domain 24 (.1) Lus10012608 [exp] 50 / 2e-06 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10027435 [exp] 50 / 2e-06 AT5G62070 207 / 3e-62 IQ-domain 23 (.1) Lus10010104 [exp] 50 / 3e-06 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10013362 [exp] 47 / 3e-05 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G047800 [exp] 207 / 1e-62 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.001G190500 [exp] 202 / 6e-61 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.008G156700 [exp] 63 / 1e-10 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 55 / 5e-08 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.012G139800 [exp] 55 / 6e-08 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.012G016200 [exp] 51 / 1e-06 AT3G49260 215 / 2e-64 IQ-domain 21 (.1.2.3) Potri.014G104600 [exp] 50 / 2e-06 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.001G448100 [exp] 49 / 5e-06 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.002G178500 [exp] 49 / 6e-06 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.011G153400 [exp] 48 / 7e-06 AT4G00820 331 / 3e-107 IQ-domain 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10043033 pacid=23168305 polypeptide=Lus10043033 locus=Lus10043033.g ID=Lus10043033.BGIv1.0 annot-version=v1.0 ATGGGTAAAGCTGGTAGGTGGATCAAGAGCTTGTTTGGGATAAAACCCAACACTAGCAGAAGAAATAAGGACAACAATTCTACAGATCGTCGGACATGGT GCGGCGGATTCGGGAGGGAGTATTCCAGCGGGAGGTTGTATCCCAATCTGGATAACAACAACATTCCTCCACCGGAATCCGATTGGCTCAAGTCTTATTA CCACGACGAGAAAGAGCAGAACAAGCACGCTATTGCGGTTGCTGCTGCCAGCGCCGCTCCCGCGGGTGCNNNGCCGCGGATGCCGCCGTTGCTGCTGCTC AGGCTGCCGTCGCCGTCGTCAGACTCACTAGCCATGGAGGCAGAATGTTTAGCAGCCGCCAGACCTTTGCTGCCGTCAAGATTCAGTCGGTTTTCAGAGG CGAGGAAGGCGTTGCGAGCTCTGAAAGGATTGGTGAAAATACAAGCGCACTTCAGAGGTTATTTGGCGAGGAAACAAGCCAATCAGACTCTTGACAGTAT GAAAACGTTGATCAGGGCACAATCCGCCGCTCGCTCCCAAAGAGCTCGTCGTAGCCGAATGGAACTCCGAGCACGGAAATCCTTGGAGAGATTTGACGAG ATTAGAAGTGGTCATCATCATAATCATCACACTACTACAACTTCAGTCCACCATAGTCGCCGGCTCTCGGCTTCTCTCGATACCGCTTCATTAATTGATG CCGCCAGCAATCTAATTGACGATACGCCCAAGATTGTGGAGATGGATACAGGGAGCAGCAGCAGGCACAGGTCCAGATCTGGACGATGTACAACAGTTTC CGAATTCGGCCATGATCCAGCGCCGCCGCCTCCGTCGAGAAATACTCCCCGACTGTCGATTCCAGACTGCCCCCAGCCTTTGGATTGGGGGTTCGCCGGC GACGAGTGCGGATTCTACACGGCGCACAGCACTCCTAGGTTTCCGACGCCGGTGACGCCGGCGAAGAGCATCTGCGGCGGGGAGAATTTCTTCCGGTCTC CGTATTACGGTGGGCCCGTCCCTAGTTACATGGCGAATACGCAGTCGTTTAGGGCGAAGTTGAGGTCGTACAGTGCGCCGAGGCAGAGGCCAGAGTCGGG AACGCCGGGGATGAAGAGGGCATCGCTGAATGAGCTGATGGAGTCGAGGAACAGCTTGAGCGGAGTGAGGATGGAGAGGTCGTGTTCCCAAGCTCAGGAA GCCGCCGCAAGCGGTGATGGTTAA
AA sequence Show only first row Show all	>Lus10043033 pacid=23168305 polypeptide=Lus10043033 locus=Lus10043033.g ID=Lus10043033.BGIv1.0 annot-version=v1.0 MGKAGRWIKSLFGIKPNTSRRNKDNNSTDRRTWCGGFGREYSSGRLYPNLDNNNIPPPESDWLKSYYHDEKEQNKHAIAVAAASAAPAGXXPRMPPLLLL RLPSPSSDSLAMEAECLAAARPLLPSRFSRFSEARKALRALKGLVKIQAHFRGYLARKQANQTLDSMKTLIRAQSAARSQRARRSRMELRARKSLERFDE IRSGHHHNHHTTTTSVHHSRRLSASLDTASLIDAASNLIDDTPKIVEMDTGSSSRHRSRSGRCTTVSEFGHDPAPPPPSRNTPRLSIPDCPQPLDWGFAG DECGFYTAHSTPRFPTPVTPAKSICGGENFFRSPYYGGPVPSYMANTQSFRAKLRSYSAPRQRPESGTPGMKRASLNELMESRNSLSGVRMERSCSQAQE AAASGDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	0	1
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Lus10022440 [exp]	2.0	0.9447
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10024855 [exp]	2.4	0.9313
AT2G05790			O-Glycosyl hydrolases family 1...		Lus10015151 [exp]	2.6	0.9304
AT5G10010			unknown protein		Lus10005778 [exp]	3.3	0.9285
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	3.5	0.9518
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	4.9	0.9440
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10032439 [exp]	5.7	0.9424
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10016972 [exp]	5.9	0.9130
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10030045 [exp]	6.0	0.9115
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10042325 [exp]	6.6	0.9086

Compare expression of checked genes

Lus10043033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.