Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27420 52 / 3e-07 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT4G17905 50 / 8e-07 ATL4H RING/U-box superfamily protein (.1) AT4G10150 49 / 1e-06 RING/U-box superfamily protein (.1) AT4G10160 49 / 1e-06 RING/U-box superfamily protein (.1) AT2G17450 48 / 1e-06 RHA3A RING-H2 finger A3A (.1) AT3G60220 49 / 2e-06 ATL4 TOXICOS EN LEVADURA 4 (.1) AT5G17600 48 / 4e-06 RING/U-box superfamily protein (.1) AT3G62690 47 / 4e-06 ATL5 AtL5 (.1) AT5G41440 46 / 4e-06 RING/U-box superfamily protein (.1) AT2G01150 45 / 6e-06 RHA2B RING-H2 finger protein 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016924 [exp] 327 / 7e-112 AT4G10160 61 / 2e-10 RING/U-box superfamily protein (.1) Lus10012745 [exp] 50 / 7e-07 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10015901 [exp] 47 / 1e-05 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10028454 [exp] 45 / 1e-05 AT1G72200 85 / 3e-19 RING/U-box superfamily protein (.1) Lus10001421 [exp] 47 / 2e-05 AT2G42770 274 / 7e-90 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10006493 [exp] 46 / 2e-05 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10005389 [exp] 44 / 2e-05 AT5G07040 154 / 9e-49 RING/U-box superfamily protein (.1) Lus10016541 [exp] 44 / 3e-05 AT5G57750 68 / 2e-14 RING/U-box superfamily protein (.1) Lus10037490 [exp] 45 / 5e-05 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G279200 [exp] 54 / 3e-08 AT5G58580 101 / 4e-25 TOXICOS EN LEVADURA 63 (.1) Potri.009G073900 [exp] 52 / 1e-07 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.013G073500 [exp] 50 / 7e-07 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 49 / 2e-06 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 49 / 2e-06 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.003G073300 [exp] 49 / 2e-06 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 49 / 2e-06 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.002G153400 [exp] 48 / 2e-06 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1) Potri.009G110000 [exp] 49 / 3e-06 AT3G18930 227 / 5e-70 RING/U-box superfamily protein (.1.2) Potri.019G043900 [exp] 48 / 3e-06 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10043034 pacid=23168346 polypeptide=Lus10043034 locus=Lus10043034.g ID=Lus10043034.BGIv1.0 annot-version=v1.0 ATGGCGGCCCAAGACTACGAGACCTTGGTGACTCTACTTGTAAGCAATCCGCCTTCTTCTGCTAAATTACTAGACCAACCAGATTCAGAATCTCCCACAA TATCCCAGGTACTGCTCCATGGGAAGTTCGACCGCATCTATCAAAGCCATAACCCCCCGCCGCCGCTCAGGCAGTTAGTAGACCAATCCTACGGCACCAA ACTCAGAATCCCGGCGGACAATAAGGAGTCAATGCACAACATCGTTTCGAGGATCTTGAGCATCATCCCTCTCCGTTTGGAGAAGAAGAACATGTACGGG AGCAGTAAGAAATGGGATCCAGTGGATGGCAGAGAGGGTTTGGTGTCCCGAATCGTGCAAGATCTGCTGCGATTGGTGGCAAAAATGGAAGATCAGGATG GAAAAGTAGAGTTGAAGGTGTACTTGAAGATTGAAGAGAGGATTAGGGTGACAGATGAGGATTATCAAGGGAGGTGGAGGGCTAAAAGAGAAGGGGAGAT GGTCGTGGTAGAGGAATATTTGGAGAAGATGTTGATTCAGTATCAACAGAGGATGAATAAGAAGGTGGCGGTGGCAGATCTGAAGAGAGTGGTTGCGATG GCGATAGAGCGTAAATATGGAACAAGTATGCAGCTGGAGAGTGGTACCATTGATGGGATCGCTAAGAGAGCAGAAGAGGCGTGGAAGAAGATTACGTTTC CCAAAATCAAGAGGGCTCTTGTTTTTGTGGCTGTGAACAGCAAGGAAGAAGAAGATGAGATGGGGGAGTGCAGTATCTGCTTGGGACCCAAAACGGCGTC GGAGGAGATGGATGCTGTGATTCTCGGATTGAGTAAATGTGGTCTCTCTTTCCACAAGCGCTGCCTTCTTCTCTGGCTCAAGAAAACTTTCAATTGCCCT TTGTGTCGCTCCCCTCTTTTCTAG
AA sequence Show only first row Show all	>Lus10043034 pacid=23168346 polypeptide=Lus10043034 locus=Lus10043034.g ID=Lus10043034.BGIv1.0 annot-version=v1.0 MAAQDYETLVTLLVSNPPSSAKLLDQPDSESPTISQVLLHGKFDRIYQSHNPPPPLRQLVDQSYGTKLRIPADNKESMHNIVSRILSIIPLRLEKKNMYG SSKKWDPVDGREGLVSRIVQDLLRLVAKMEDQDGKVELKVYLKIEERIRVTDEDYQGRWRAKREGEMVVVEEYLEKMLIQYQQRMNKKVAVADLKRVVAM AIERKYGTSMQLESGTIDGIAKRAEEAWKKITFPKIKRALVFVAVNSKEEEDEMGECSICLGPKTASEEMDAVILGLSKCGLSFHKRCLLLWLKKTFNCP LCRSPLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27420		CNI1, ATL31	carbon/nitrogen insensitive 1 ...		Lus10043034 [exp]	0	1
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10011495 [exp]	1.4	0.8741
AT2G01818			PLATZ transcription factor fam...		Lus10030763 [exp]	2.2	0.8630
					Lus10011351 [exp]	4.5	0.8210
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10028978 [exp]	4.7	0.8654
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10003681 [exp]	4.9	0.8346
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	6.3	0.8444
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	10.5	0.8652
AT1G60783			unknown protein		Lus10004622 [exp]	11.8	0.8641
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10020045 [exp]	13.2	0.8517
AT4G01140			Protein of unknown function (D...		Lus10007859 [exp]	13.6	0.8058

Compare expression of checked genes

Lus10043034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.