Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19730 532 / 0 Pectin lyase-like superfamily protein (.1) AT2G36710 276 / 2e-90 Pectin lyase-like superfamily protein (.1) AT1G05310 270 / 4e-88 Pectin lyase-like superfamily protein (.1) AT5G47500 261 / 6e-85 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT3G29090 258 / 1e-84 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT2G36700 251 / 1e-81 Pectin lyase-like superfamily protein (.1) AT5G55590 251 / 6e-81 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT2G21610 242 / 7e-78 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G07430 235 / 6e-75 Pectin lyase-like superfamily protein (.1) AT1G69940 230 / 7e-73 ATPPME1 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011132 [exp] 650 / 0 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 557 / 0 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 400 / 4e-140 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 401 / 7e-140 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 274 / 2e-89 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 273 / 2e-89 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 269 / 3e-88 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10027737 [exp] 268 / 4e-87 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1) Lus10026347 [exp] 261 / 6e-85 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068400 [exp] 556 / 0 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 443 / 2e-156 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 278 / 2e-91 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 272 / 2e-89 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 271 / 1e-88 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 268 / 3e-87 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.004G128820 [exp] 264 / 8e-87 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.004G156300 [exp] 252 / 8e-82 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.006G137100 [exp] 244 / 3e-78 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 243 / 4e-78 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10043035 pacid=23168002 polypeptide=Lus10043035 locus=Lus10043035.g ID=Lus10043035.BGIv1.0 annot-version=v1.0 ATGACAGCAAGATCCCAACTGTCGGAACAGCAATTCATCAAGTGGGTCGAATTCGTTGGCACCTTAAAGCACTCCATCTTCAAGGTAGCCAAGAACAAGC TCTTCCCTTCTTTTACCCTCACCGTCGACAAGAACCCTGCCGCAGGGGACTTCACCTCCATTCAGAAGGCCATTGATTCCCTCCCTTTCATCAACATTGT TAGAGTCGTCATCAAGGTCCACGCTGGAGTTTACACGGAGAAAGTAAGCATACCAGCACTGAAGTCATTCATAACGATACAAGGTGCAGGAGCCGAGAAC ACAATTGTACAATGGGGAGACACCGCCGAAACCCCTTCACCTTCCAACCGCAACAAGCCCATGGGAACTTACGGTTCCGCCACTTTCGCCGTCAACTCAC CTTTCTTCGTCGCCAAGTACATCACTTTCAAGAACACGTCCCCTGTTCCGCCCCCCGGAGCTGCAGGGAAGCAGGCGGTGGCGTTGAGGATATCTGCCGA CACGGCAGCGTTCGTGGGCTGCAGATTCCTGGGCGGACAGGACACTCTGTACGATCATTTCGGGAGGCATTATTACAAAGGTTGCTACATTGAAGGATCT GTGGATTTCATCTTCGGGAACGGCCTCTCCTACTTTGAGGGGTGTCACGTGCACGCAATAGCGGACACGTACACAGGGGCACTAACAGCACAAGGGAGGA GTAGCTTGTTGCAGGACACAGGGTTTTCGTTCGTGAAATGCAGAGTGACTGGTTCAGGAGGAGCTCTGTTTCTGGGAAGGGCATGGGGTCCTTTCTCGAG GGTTGTGTTTGCTTACACTTACATGGACGACTTCATCCTCCCCAAAGGCTGGTACAACTGGGGCGACCCTACCCGTGAATTGACGGTGTTCTATGGGCAG TACAAGTGTAGGGGAGCAGGGGCTAGATTTGGTGGAAGAGTGGCTTGGTCTAGAGAGCTCAGTGACGATGAAGCTAAGCCTTTCCTTTCTCTTAGCTTCA TTGATGGTTCCGAATGGATTCAACTCTAA
AA sequence Show only first row Show all	>Lus10043035 pacid=23168002 polypeptide=Lus10043035 locus=Lus10043035.g ID=Lus10043035.BGIv1.0 annot-version=v1.0 MTARSQLSEQQFIKWVEFVGTLKHSIFKVAKNKLFPSFTLTVDKNPAAGDFTSIQKAIDSLPFINIVRVVIKVHAGVYTEKVSIPALKSFITIQGAGAEN TIVQWGDTAETPSPSNRNKPMGTYGSATFAVNSPFFVAKYITFKNTSPVPPPGAAGKQAVALRISADTAAFVGCRFLGGQDTLYDHFGRHYYKGCYIEGS VDFIFGNGLSYFEGCHVHAIADTYTGALTAQGRSSLLQDTGFSFVKCRVTGSGGALFLGRAWGPFSRVVFAYTYMDDFILPKGWYNWGDPTRELTVFYGQ YKCRGAGARFGGRVAWSRELSDDEAKPFLSLSFIDGSEWIQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19730			Pectin lyase-like superfamily ...		Lus10043035 [exp]	0	1
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Lus10002160 [exp]	1.0	0.8954
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10037391 [exp]	1.4	0.8634
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	9.5	0.8397
AT5G51560			Leucine-rich repeat protein ki...		Lus10031702 [exp]	14.8	0.8608
AT3G05470			Actin-binding FH2 (formin homo...		Lus10029897 [exp]	15.2	0.8573
AT2G46310	AP2_ERF	CRF5	cytokinin response factor 5 (....		Lus10003037 [exp]	18.2	0.7973
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	22.9	0.8559
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10009336 [exp]	30.0	0.8165
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	32.5	0.8090
AT5G12930			unknown protein		Lus10031827 [exp]	32.5	0.8423

Compare expression of checked genes

Lus10043035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.