Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19740 716 / 0 Peptidase M28 family protein (.1) AT3G54720 427 / 4e-141 MFO1, HPT, COP2, AMP1 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) AT4G07670 307 / 3e-100 protease-associated (PA) domain-containing protein (.1), protease-associated (PA) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011133 [exp] 1126 / 0 AT5G19740 806 / 0.0 Peptidase M28 family protein (.1) Lus10021090 [exp] 367 / 2e-119 AT3G54720 628 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) Lus10017223 [exp] 359 / 7e-117 AT3G54720 630 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153300 [exp] 784 / 0 AT5G19740 877 / 0.0 Peptidase M28 family protein (.1) Potri.016G064300 [exp] 467 / 9e-157 AT3G54720 803 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF04389 [flax] [poplar] Peptidase_M28 Peptidase family M28 CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10043036 pacid=23167942 polypeptide=Lus10043036 locus=Lus10043036.g ID=Lus10043036.BGIv1.0 annot-version=v1.0 ATGTTGAAATCAGCTATCTATGCCTTCCTCAACTTAGCAACCTCTCTAACCTTATTCGTCTTCTCCACCACTACCCCTCCTCCTCCAAAATCACACTACC ATTCTCTCTTCCTATCCACCTCCTTCACCGACAACGCCTCCATTTCTCACAACCTCTACACCCTCACCCGCCACCCTCACGTCGCCGGCACCCAAGCCAA CGCCCACACCGCCCGCTACGTCCTCTCAACTCTCTCAACCTCATCCATCAAATCCCATCTAGCCTCCTACGACGTCGCCCTCACCTACCCTGCTTCCCGC TCCTTAACACTGCATCATCATGATCATCACCACACATTCGATCTCCGTCAGAAGAAGTACCACGGCGAATCACCCTACGCCGACGAAGTCCTCCCGACTT TCCACGGCTACGGCAAGTCTGGGAACGTCAGCGGACGTGTCACCTACGCCAACTACGGGCGCGTCGAGGACTATGAAAGGTTGAAACAGATGGGAGTCAA CGTTTCCGGGACCATCGTGTTGGCGAAGTACGGGCAAATTTACAGAGGTGATATTGTGGATAATGCTTACGTGGAGGGCGCTGTAGGGACGATCATATAC TCTGATAGGATAGACTTCGGTGGCGGTGGTGGTGATTGGTTCCCGGATTCCAAGTGGCTGCCGCCGAGTGGGGTGCAGGTTGGCTCCGTGTATAGTGATG CTGGTGATCCTACCACCCCCGGATGGCCGAGTAGTGAAGGCTGTGAGAGGATTGGTTATGATCAAGTGGAGAAGTCTGGAGTGGTTCCGATGATTCCATC GTTGCCGGTGTCGGGTGTTGACGGGGAGGTGATCATCAAATCGATTGGTGGGGAGGTGGCTGATGATGATTGGCAAGGGAGTGAGGATGCTCCCGTTTAT AGGGTTGGACCAGGTCCAGGTGTTCTTCATCTCAACTATACTTTGCTAGCTGACAAGGTAGACTTGCAGGCGACAAAGACGATGGCTACGATCCATAATG TTATTGGGGTGATCGAAGGAGCAGAAGAACCTGATCGCTTGGTCCTCCTGGGAAATCATCGGGACGCATGGACGTTTGGTGCAGCTGATCCCAACAGTGG AACTGCAGCACTGCTTGAGATCGCCCAGAGACTAGGAAAGCTTCAGAAGAAAGGCTGGAAACCTCGAAGAACAATTGTCTTTTGCAGTTGGGATGCTGAG GAGTACGGCCTGATAGGATCAACTGAGTGGGTTGAAGACAACAGACAAGTGTTGACATCCAAGGCTGTGGCTTACTTGAATGTGGATATAGCAGTATGTG ATGATGGGTATTCTGCTGCTGCAACTCCTCAACTTGATCAACTCCTCATAGAGGCCGCTAAACAGGTTGATGATCCGAAGAACTCATCAAGGAGCGTCTA TGACTCATGGACTGGCTCCAGTGTTTCTCCCCAGATTGGAAGGTTAGGGGGCGGAGGATCCGATTATGCAGCCTTTGTACAGCATATTGGTGTTGCATCA GTTGACATGTCTTACGGAGATGGATACCCTTTATACCACTCAATGTATGACGACTTTGTCTGGATGAGCAACTTTGGAGACCCCATGTTCCACAAACATG TTGCAGTTGCAAGCATTTGGGGATATCTGGCTCTTCGACTAGCAGACGATGAAATTTTACCATTCAATTATATACCTTATGCTGAAGAGCTCGAGAAAAG TGCAAAGGAGTTGGAAGATGTGGTATCAAGTAAGATAACAGTCGTTCCCTTGCTCAAATCTATCGGCACACTAACAAAAGCCGCAACCAAAGTGAACAAT GAGATAAAGTTAGTGCAGCATGAAGTTTGGAGGGTTGCCAGAGCCATTAATCAAGTGGCGAAGGTCCTCAGTGGGGAACTGACATGA
AA sequence Show only first row Show all	>Lus10043036 pacid=23167942 polypeptide=Lus10043036 locus=Lus10043036.g ID=Lus10043036.BGIv1.0 annot-version=v1.0 MLKSAIYAFLNLATSLTLFVFSTTTPPPPKSHYHSLFLSTSFTDNASISHNLYTLTRHPHVAGTQANAHTARYVLSTLSTSSIKSHLASYDVALTYPASR SLTLHHHDHHHTFDLRQKKYHGESPYADEVLPTFHGYGKSGNVSGRVTYANYGRVEDYERLKQMGVNVSGTIVLAKYGQIYRGDIVDNAYVEGAVGTIIY SDRIDFGGGGGDWFPDSKWLPPSGVQVGSVYSDAGDPTTPGWPSSEGCERIGYDQVEKSGVVPMIPSLPVSGVDGEVIIKSIGGEVADDDWQGSEDAPVY RVGPGPGVLHLNYTLLADKVDLQATKTMATIHNVIGVIEGAEEPDRLVLLGNHRDAWTFGAADPNSGTAALLEIAQRLGKLQKKGWKPRRTIVFCSWDAE EYGLIGSTEWVEDNRQVLTSKAVAYLNVDIAVCDDGYSAAATPQLDQLLIEAAKQVDDPKNSSRSVYDSWTGSSVSPQIGRLGGGGSDYAAFVQHIGVAS VDMSYGDGYPLYHSMYDDFVWMSNFGDPMFHKHVAVASIWGYLALRLADDEILPFNYIPYAEELEKSAKELEDVVSSKITVVPLLKSIGTLTKAATKVNN EIKLVQHEVWRVARAINQVAKVLSGELT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19740			Peptidase M28 family protein (...		Lus10043036 [exp]	0	1
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10002312 [exp]	7.5	0.8618
AT5G64380			Inositol monophosphatase famil...		Lus10007061 [exp]	8.1	0.8693
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036542 [exp]	14.8	0.8400
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	17.0	0.8589
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10000856 [exp]	18.1	0.8472
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10019083 [exp]	24.2	0.8438
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	24.7	0.8504
AT5G64380			Inositol monophosphatase famil...		Lus10020433 [exp]	26.0	0.8532
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10022278 [exp]	27.7	0.8338
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	31.9	0.8487

Compare expression of checked genes

Lus10043036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.