Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29380 1889 / 0 AtVPS15 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) AT1G33770 65 / 3e-10 Protein kinase superfamily protein (.1) AT4G10010 63 / 1e-09 Protein kinase superfamily protein (.1) AT3G01085 59 / 3e-08 Protein kinase superfamily protein (.1) AT5G04510 57 / 6e-08 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2) AT5G18700 57 / 1e-07 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) AT3G08730 57 / 1e-07 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT3G08720 55 / 3e-07 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT1G71530 55 / 3e-07 Protein kinase superfamily protein (.1.2) AT5G39420 55 / 3e-07 CDC2CAT CDC2C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011134 [exp] 2274 / 0 AT4G29380 1582 / 0.0 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) Lus10011135 [exp] 461 / 6e-152 AT4G29380 438 / 4e-144 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) Lus10001285 [exp] 63 / 2e-09 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2) Lus10009464 [exp] 63 / 2e-09 AT1G71530 652 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031651 [exp] 61 / 8e-09 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 61 / 9e-09 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10005801 [exp] 59 / 3e-08 AT1G53050 468 / 2e-157 Protein kinase superfamily protein (.1) Lus10006800 [exp] 58 / 6e-08 AT1G53050 449 / 7e-151 Protein kinase superfamily protein (.1) Lus10039836 [exp] 57 / 9e-08 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153100 [exp] 2197 / 0 AT4G29380 2099 / 0.0 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) Potri.013G130000 [exp] 62 / 2e-09 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1) Potri.010G002500 [exp] 61 / 3e-09 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.013G100100 [exp] 60 / 1e-08 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G003700 [exp] 59 / 2e-08 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.006G171400 [exp] 59 / 2e-08 AT5G57630 549 / 0.0 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) Potri.010G071400 [exp] 58 / 2e-08 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.019G073100 [exp] 57 / 1e-07 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G166500 [exp] 55 / 2e-07 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.004G226900 [exp] 56 / 3e-07 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10043037 pacid=23167897 polypeptide=Lus10043037 locus=Lus10043037.g ID=Lus10043037.BGIv1.0 annot-version=v1.0 ATGGGGAACAAGATCGCGCGCACGACGCAGGTCTCCGCTTCCGAGTACTACCTCCACGATTTGCCTTCTTCTTACAATTTGGTTCTTAAGGAGGTCCTTG GCCGCGGCAGATTCTTCAAGACCGTTCTCTGCAAGCACGACGAAGGTTTGGTCCTCGTCAAGGTCTATTTCAAGCGCGGCGACTCCATCGACCTCAGGGA ATACGAGCGTCATCTCTCCTTTATCAAAGATACCTTCCGCTCCATCGATCATCCTCACGTCTGGCCTTTCCAGTTCTGGCAAGAGACTGATAAGGCAGCC TATCTTCTAAGACAATATTTCTTCAACAATCTGCATGATCGACTGAGTACTCGGCCATTTCTCAATCCCATAGAGAAAAAATGGTTGGCATATCAGTTAC TTCTTGCTGTAAAACAGTGCCACGAAAAGGGTATATGTCATGGTGATATCAAGTGCGAGAATGTCTTGGTGACATCTTGGAATTGGCTGTATCTTGCTGA TTTTGCATCGTTCAAACCAACTTACATTCCTTATGATGACCCCTCTGATTTTTCGTTCTTTTTCGACACGGGTGGACGAAGACTCTGCTATCTTGCGCCT GAGAGGTTTTATGAGCATGGAGGTGAGATGCAAGTGGCTCAAGATGCACAATTAAGGCCTTCCATGGACATATTTGCAGTAGGGTGTGTAATTGCTGAGC TTTTCCTTGAAGGCCATCAATTATTTGAACTCTCTCAGCTTCTTGCTTACCGAAGAGGACAATATGATCCTAGCCAACATCTTGAAAAGGTTCCGGATGC TGGAATCCGCAAGATGATACTTCATATGATTCAGTTGGAACCCGAGGCTCGCCTTTCTGCTGAGAGCTACTTGCAAAATTATGCAGCTGTAGTATTTCCA AGTTATTTCTCTCCATTTTTGCATAATTTCTACTGCTGCTGGAATCCTCTTCATTCTGATATGAGAGTTGCAATGTGCCAGAGTGTCTTTGATGAGATAC TGAAGCAAATGGTGGGTCCCCGGACATATGAGATGATGGGGAGTGAAAGTAGCATGCCTGCAAATGACATGAGCTCTGAGTCTACGAAAGAGATGACTGA GAAACAAAATCTGGGATCGGCAAGGCTCCCAAGGGGTGGGGAAAATGCAGAGAAGGGATTGGTTCATGAGAACTACAAACTTCTTGGTGATATCAATAAT CTGCTTGGGGATGTAGACCACCACAGTGATAGTGGCATGAAGGTCATTGCTGCCGGTGAACAAGAAGACTCTTCTTTCTCCCAAGGCCTCAAGCAATGTG GTCTACAATCTCCTTGTGCGCTTCTACAGGCTATATCCAATGCATTTAGGAAAAATGATCACCCCTTTCTCAAGAAGTTCACAGTTGATGATTTGAGTTC CTTGATGTCGGAGTATGACTGTCGATCAGATACCTTTGGGATGCCCTTTTTACCTTTACCTGAAGATAGTATGAGGTGTGAAGGTATGGTTCTGATAGCT TCCCTTCTTTGTTCCTGTATACGCAATGTCAAGTTACCCCATTTGAGGAGGGGGGCCATACTTCTATTGAAGTCCTCTTCATTGTACATTGATGATGAGG ATCGGTTGCAACGTGTTCTACCATATGTCATTGTTATGCTGTCGGATCCGGTGGCAATTGTCCGTTGTGCTGCTTTAGAAACTTTGTGCGACATTCTACC TTTAGTTCGCGAGTTTCCTCCTAGTGATGCCAAAATTTTTCCTGAATATATTCTTCCAATGCTTTCCATGCTTCCTGATGACCCTGAAGAAAGTGTTAGA ATATGTTATGCTAGCAATATAGCCAAGCTCGCTCTTACTGCTTATGGATTTTTGGTTCATTCAATGAGCTTGACTGAGGCTGGTGTTCTTGATGAGTTGA GCCTGCCCCAGAAGTCTTTGCAATCAACTTGTGAGGTTGCTGGAAGGCTTCAGACTTCAAATAATGATGCTCAGCTTGCCCAATTGAGGAGATCCATTGC TGAAGTTGTCCAAGAACTTGTAATGGGCCCGAAGCAAACTCCTAATATCAGGAGAGCACTACTTCAGGACATTGGCAACTTGTGCTGTTTCTTTGGCCAA AGACAGAGCAATGACTTTCTGTTGCCCATCCTTCCTGCCTTTCTTAATGACCGGGATGAGCAACTAAGGGCACTATTCTATGGAAAGATTGTCCAATGGG TCAGAAGGTCAGTTGTAAGCTTCATTGCAGCCAGCAGTGAGAATTTAGGTGCAGTTGATTCATATGTATTCCTTGCCCCTGTCATTCGTCCTTTCCTCCG CAGGCAACCGGCTTCTCTAGCTTCAGAGAATTCTCTCTTTTCATGTCTAAAGCCTCCTGTGTGTCGCCAAACATTTTATCAGATCTTGGAAAACGCCAGG AGTTCAGACATGTTGGAAAGACAGCGGAAAATTTGGTACAATTCATCTGCTCAATCAAAAAAAGGGGAAACCACTGAGATGCTTACGCAGCCGAATGGAG AGATAAAATCGATTAGACATTGGACGGACAGAAAACAGAGTCCAGATGATAAGAAACTCAACCTAAATGGAACGTATGAGCTAGAGAATTCTCAGACACG GTTGAGAGCTTCTGGCATTATAGACAATGTTTCTGCCATGGGCAACATTCCTGATCACATATGCTCAGAGAAGCTGCAATTCTCTGGGTATTTATCAGCA CATGTCAGTGGTGTGAATAGTCTGATTCATGATAAGTCCTCACAAGATTTCCCTGTCTATTGCTTTGGAATGGACAGGAGAGCAGTGAAACTGCCTTCTG CAGCCTCTGATTCTTCATTACGAATGACTACCCTTGAAATCAATTCAACATACATGCCTTGGATGGATCCGACAAACAAATCTATGCACTTGGCTAGTTC TGTTCCTACACCAAAGCTGCTATCCAGCTCATTCAGTATTGCTGGTGGCCCGAAACAGTTTTATAGAGTGGTGCATGAACCAGAAAGTAGGGAAAATGAT CAGACGGCTTATGTCAGTAGTAAATACCGAGACACTGGATTATCTAACACAACAAAAGGGAACAGTTTTACAGTAGATGATGCTGCTATGACAAGTGATG CATCAGGATTGCCATCTTTTGTGCGGGCTACCTCAGTCCCAGATTCAGGTTGGAAACCTCGTGGTGTGTTGGTTGCACACCTGCAGGAGCATCGTTCTGC TGTCAATGACCTTGCAATTTCAAATGATCAAACTCTTTTTGTGAGTGCATCTGATGATTCAACTGTCAAGATTTGGGATACAAGAAAGTTGGAAAAAGAC ATATCATTCAGGTCAAGGTTGAGTTATCATCTTGAGGGAAGCCGAGGACTTTGTTCTGTAATGCTTCGGAACTCTGCTAAAGTGGTTGTTGGAGCATGTG ATGGAGTGCTTCATGTATTTTCTGTGGATCACATATCCAGAGGCCTTGGCAATGTTGTTGAGAAATACTCGGGTATTACAGATATAAAAAAGAAGGATAC TAAGGAAGGTGCCATCCTTAGCCTTCTGAACTACACTGATAATAGTGACAGCCAGATTGTTATGTTCAGTACTCGGAATTATGGGATCCATATGTGGGAT CTAAGGGAAACTCGAAGTGCGTGGACACTAAAGGCGGCCCCAGAGGAAGGATATGTGTCTTCACTGGTAACAGGACCCTGTGGAAACTGGTTTGTGTCAG GATCTTCTAGGGGTGTGCTTACTCTTTGGGATCTAAGGTTCCTTGTTCCTGTTAACTCATGGCGGTATTCTCTTGCCTGTCCTGTGGAGAAGATGAGCTT GTTTATTCCTCCCTCAAATGTTTCTGTGTCATCTACTGCACGGCCACTGGTGTATGTTGCTGCAGGTTGCAATGAAGTTTCTCTTTGGAATGCTGAGAAT GGGAGTTGTCACCAGGTATTTCGGATGGCAAGTTATGAAGGTGACCCTGAAACTTCTGATGTACCATCAGCATTAGCCAAACCTTCCAGTAAGGCAATAT CCAAATCAGATAGGCGTAATGTCAACCCAAAATATCGGGTTGATGAACTGAATGAACCTCCTCCTCGTCTTCCGGGTATCCGTTCAATGCTTCCCTTACC TGGTGGCGATTTGTTGACCGGGAGTACTGACTTAAGGATACGTAGATGGGACCATTGCAGTCCAGAGAAAAGTTACTGCATATCTGGACCTAACTTAAAT GGAACTGGAAACGAGAATTTGTACGAAGCAAGGCCATTTTCTGGGGTGCAAGTTGTCCAGGAGATTAGAAGACGACCTTCAACAACACAGTTGACCACAA AGGCAGTTCTTGCAGCTGCTGCTACAGACTCTGCCGGTTGCCATAGGGATTCTGTCCTGTCTTTGGCCACTGTAAAGTTGAACCAAAGGCTTCTTATTTC AAGTGGTAGAGATGGAGCTATCAAGGTTTGGAAATAA
AA sequence Show only first row Show all	>Lus10043037 pacid=23167897 polypeptide=Lus10043037 locus=Lus10043037.g ID=Lus10043037.BGIv1.0 annot-version=v1.0 MGNKIARTTQVSASEYYLHDLPSSYNLVLKEVLGRGRFFKTVLCKHDEGLVLVKVYFKRGDSIDLREYERHLSFIKDTFRSIDHPHVWPFQFWQETDKAA YLLRQYFFNNLHDRLSTRPFLNPIEKKWLAYQLLLAVKQCHEKGICHGDIKCENVLVTSWNWLYLADFASFKPTYIPYDDPSDFSFFFDTGGRRLCYLAP ERFYEHGGEMQVAQDAQLRPSMDIFAVGCVIAELFLEGHQLFELSQLLAYRRGQYDPSQHLEKVPDAGIRKMILHMIQLEPEARLSAESYLQNYAAVVFP SYFSPFLHNFYCCWNPLHSDMRVAMCQSVFDEILKQMVGPRTYEMMGSESSMPANDMSSESTKEMTEKQNLGSARLPRGGENAEKGLVHENYKLLGDINN LLGDVDHHSDSGMKVIAAGEQEDSSFSQGLKQCGLQSPCALLQAISNAFRKNDHPFLKKFTVDDLSSLMSEYDCRSDTFGMPFLPLPEDSMRCEGMVLIA SLLCSCIRNVKLPHLRRGAILLLKSSSLYIDDEDRLQRVLPYVIVMLSDPVAIVRCAALETLCDILPLVREFPPSDAKIFPEYILPMLSMLPDDPEESVR ICYASNIAKLALTAYGFLVHSMSLTEAGVLDELSLPQKSLQSTCEVAGRLQTSNNDAQLAQLRRSIAEVVQELVMGPKQTPNIRRALLQDIGNLCCFFGQ RQSNDFLLPILPAFLNDRDEQLRALFYGKIVQWVRRSVVSFIAASSENLGAVDSYVFLAPVIRPFLRRQPASLASENSLFSCLKPPVCRQTFYQILENAR SSDMLERQRKIWYNSSAQSKKGETTEMLTQPNGEIKSIRHWTDRKQSPDDKKLNLNGTYELENSQTRLRASGIIDNVSAMGNIPDHICSEKLQFSGYLSA HVSGVNSLIHDKSSQDFPVYCFGMDRRAVKLPSAASDSSLRMTTLEINSTYMPWMDPTNKSMHLASSVPTPKLLSSSFSIAGGPKQFYRVVHEPESREND QTAYVSSKYRDTGLSNTTKGNSFTVDDAAMTSDASGLPSFVRATSVPDSGWKPRGVLVAHLQEHRSAVNDLAISNDQTLFVSASDDSTVKIWDTRKLEKD ISFRSRLSYHLEGSRGLCSVMLRNSAKVVVGACDGVLHVFSVDHISRGLGNVVEKYSGITDIKKKDTKEGAILSLLNYTDNSDSQIVMFSTRNYGIHMWD LRETRSAWTLKAAPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWRYSLACPVEKMSLFIPPSNVSVSSTARPLVYVAAGCNEVSLWNAEN GSCHQVFRMASYEGDPETSDVPSALAKPSSKAISKSDRRNVNPKYRVDELNEPPPRLPGIRSMLPLPGGDLLTGSTDLRIRRWDHCSPEKSYCISGPNLN GTGNENLYEARPFSGVQVVQEIRRRPSTTQLTTKAVLAAAATDSAGCHRDSVLSLATVKLNQRLLISSGRDGAIKVWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	0	1
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	1.0	0.9892
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	2.4	0.9435
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	3.0	0.9375
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	3.5	0.9029
AT1G11060			WAPL (Wings apart-like protein...		Lus10018478 [exp]	3.9	0.8884
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	4.0	0.9176
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10014310 [exp]	5.5	0.8968
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10003405 [exp]	6.7	0.9054
AT3G45830			unknown protein		Lus10018121 [exp]	6.9	0.9001
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10012733 [exp]	7.9	0.8759

Compare expression of checked genes

Lus10043037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.