Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56550 66 / 1e-13 ATOXS3 oxidative stress 3 (.1) AT4G26288 53 / 7e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011137 [exp] 188 / 1e-60 AT5G56550 74 / 2e-16 oxidative stress 3 (.1) Lus10012939 [exp] 120 / 3e-34 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10034985 [exp] 120 / 3e-34 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10025837 [exp] 65 / 4e-13 AT5G56550 65 / 2e-13 oxidative stress 3 (.1) Lus10038265 [exp] 64 / 1e-12 AT5G56550 66 / 9e-14 oxidative stress 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190700 [exp] 72 / 1e-15 AT5G56550 81 / 4e-19 oxidative stress 3 (.1) Potri.006G273100 [exp] 40 / 0.0007 AT5G24890 129 / 1e-36 unknown protein Potri.018G008200 [exp] 39 / 0.0009 AT5G24890 131 / 3e-37 unknown protein Potri.018G048100 [exp] 39 / 0.001 AT5G21940 110 / 4e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043039 pacid=23168046 polypeptide=Lus10043039 locus=Lus10043039.g ID=Lus10043039.BGIv1.0 annot-version=v1.0 ATGGCAATGGAGGAGGAGGAGGATCAATTCTGTGAATCAAAATCTGGCCGGAATAAAGAGCTGGAACCATCTTCTTCTTCTTCTTCTTCATTTGGTTCAC CTTCCAATTCTTCCTGTTTTTCTGAAGATGATGGAGACGAAGCATCCTCATCCCCACCTTCAACCTCTTCTTCTTCTTCTTCTTCAAATTCATCTTCATC ATCCGCATTGCACGCAAACAACAACATCAATGATGACAGCCCTCTCTATGAATTGTCTCAGCTCATGGCCCAACTCCCCATCAAGAGGGGATTGTCGAGA TTCTACCAGGGGAAATCGCAGTCGTACACATCTCTGTTAGGAAGTGTGAACAGCTTGGACGATCTGGCGAAGAAGAGAGTGGCTAATTCAGGGAGAATCC TGAAGATGAAGACCAAATGCAGAAGCTTCTGTTGGGGTTTGGAAAGGCAGAAGCATTGCTACGGTCCTAAGCCTGCAATTTCCAAGAAGGGTTCTTCAAC TTCCAGGGGATCATCCTCCTCATGTTTTACTTCTCTGCAATTTCCAAGACCTCCCGCTCCTTCTCCTTCTTCTTCGGTGTCACTAAATACTGCTACTTAG
AA sequence Show only first row Show all	>Lus10043039 pacid=23168046 polypeptide=Lus10043039 locus=Lus10043039.g ID=Lus10043039.BGIv1.0 annot-version=v1.0 MAMEEEEDQFCESKSGRNKELEPSSSSSSSFGSPSNSSCFSEDDGDEASSSPPSTSSSSSSSNSSSSSALHANNNINDDSPLYELSQLMAQLPIKRGLSR FYQGKSQSYTSLLGSVNSLDDLAKKRVANSGRILKMKTKCRSFCWGLERQKHCYGPKPAISKKGSSTSRGSSSSCFTSLQFPRPPAPSPSSSVSLNTAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10043039 [exp]	0	1
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10035560 [exp]	2.4	0.8834
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10008619 [exp]	2.4	0.8634
AT1G53210			sodium/calcium exchanger famil...		Lus10028144 [exp]	3.2	0.8403
AT4G32290			Core-2/I-branching beta-1,6-N-...		Lus10001503 [exp]	5.3	0.8524
AT1G27070			5'-AMP-activated protein kinas...		Lus10037220 [exp]	5.6	0.7849
AT2G33500	CO	COL14	B-box type zinc finger protein...		Lus10041526 [exp]	6.5	0.8154
AT1G15740			Leucine-rich repeat family pro...		Lus10035912 [exp]	7.3	0.8351
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015318 [exp]	12.8	0.8146
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	13.0	0.8221
AT5G64480			unknown protein		Lus10007107 [exp]	13.5	0.8540

Compare expression of checked genes

Lus10043039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.