Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19760 223 / 1e-76 PRF1, PFN1 profilin 1 (.1) AT5G56600 223 / 3e-76 PRF3, PFN3 profilin 3 (.1.2) AT4G29350 220 / 2e-75 PRF2, PFN2, PRO2 profilin 2 (.1) AT2G19770 215 / 1e-73 PRF5 profilin 5 (.1) AT4G29340 212 / 3e-72 PRF4 profilin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011138 [exp] 265 / 5e-93 AT2G19760 225 / 2e-77 profilin 1 (.1) Lus10012936 [exp] 253 / 2e-88 AT4G29350 223 / 2e-76 profilin 2 (.1) Lus10034988 [exp] 251 / 2e-87 AT4G29340 219 / 3e-75 profilin 4 (.1) Lus10037591 [exp] 234 / 5e-81 AT2G19770 231 / 6e-80 profilin 5 (.1) Lus10006846 [exp] 232 / 4e-80 AT2G19770 229 / 5e-79 profilin 5 (.1) Lus10034989 [exp] 214 / 6e-73 AT4G29340 234 / 6e-81 profilin 4 (.1) Lus10011139 [exp] 212 / 2e-72 AT4G29340 238 / 1e-82 profilin 4 (.1) Lus10043041 [exp] 212 / 4e-72 AT4G29340 239 / 9e-83 profilin 4 (.1) Lus10012935 [exp] 207 / 2e-70 AT4G29340 235 / 2e-81 profilin 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190800 [exp] 241 / 6e-84 AT2G19760 196 / 8e-66 profilin 1 (.1) Potri.003G047700 [exp] 238 / 2e-82 AT4G29340 224 / 5e-77 profilin 4 (.1) Potri.018G057600 [exp] 231 / 1e-79 AT4G29340 188 / 5e-63 profilin 4 (.1) Potri.006G235200 [exp] 228 / 1e-78 AT4G29340 216 / 1e-73 profilin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF00235 [flax] [poplar] Profilin Profilin
Representative CDS sequence Show only first row Show all	>Lus10043040 pacid=23167960 polypeptide=Lus10043040 locus=Lus10043040.g ID=Lus10043040.BGIv1.0 annot-version=v1.0 ATGTCGTGGCAGACCTACGTTGACGACCATCTCCTCTGCGACGTCGAGGGTAACCACCTCTCTGCCGCCGCCATCATCGGCCACGACGGCAGCGTTTGGG CCCAGAGCGCCACCTTCCCTCAGTTGAAACCTGAAGAAGTTACTGGTGTTATGAATGACTTCGAAGAACCTGGTTCACTAGCACCCACTGGATTGTACCT TGGAGGCACAAAGTACATGGTGATTCAAGGCGAGGCAGGAGCTGTCATCCGAGGGAAGAAGGGTGCTGGCGGAGTAACCATTAAGAAGACCAGTCTTGCC TTGGTGATTGGTATCTACGATGAGCCAATGACCCCAGGACAGTGCAATGTAGTCGTTGAAAGGCTTGGCGATTATCTTGTCGATCAGGGTCTTTAA
AA sequence Show only first row Show all	>Lus10043040 pacid=23167960 polypeptide=Lus10043040 locus=Lus10043040.g ID=Lus10043040.BGIv1.0 annot-version=v1.0 MSWQTYVDDHLLCDVEGNHLSAAAIIGHDGSVWAQSATFPQLKPEEVTGVMNDFEEPGSLAPTGLYLGGTKYMVIQGEAGAVIRGKKGAGGVTIKKTSLA LVIGIYDEPMTPGQCNVVVERLGDYLVDQGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56600		PRF3, PFN3	profilin 3 (.1.2)		Lus10043040 [exp]	0	1
AT3G05500			Rubber elongation factor prote...		Lus10029892 [exp]	1.4	0.8565
AT3G52710			unknown protein		Lus10022708 [exp]	2.0	0.8438
AT4G38690			PLC-like phosphodiesterases su...		Lus10025062 [exp]	4.5	0.8259
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	5.5	0.8313
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001947 [exp]	6.9	0.7942
AT1G11360			Adenine nucleotide alpha hydro...		Lus10039730 [exp]	8.1	0.7955
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	8.4	0.8107
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	8.4	0.8218
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10041182 [exp]	10.2	0.7914
					Lus10026314 [exp]	11.7	0.8193

Compare expression of checked genes

Lus10043040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.