Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29340 207 / 2e-70 PRF4 profilin 4 (.1) AT2G19770 198 / 9e-67 PRF5 profilin 5 (.1) AT4G29350 176 / 4e-58 PRF2, PFN2, PRO2 profilin 2 (.1) AT2G19760 170 / 1e-55 PRF1, PFN1 profilin 1 (.1) AT5G56600 161 / 8e-52 PRF3, PFN3 profilin 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011139 [exp] 237 / 3e-82 AT4G29340 238 / 1e-82 profilin 4 (.1) Lus10034989 [exp] 231 / 7e-80 AT4G29340 234 / 6e-81 profilin 4 (.1) Lus10012935 [exp] 227 / 4e-78 AT4G29340 235 / 2e-81 profilin 4 (.1) Lus10037591 [exp] 200 / 2e-67 AT2G19770 231 / 6e-80 profilin 5 (.1) Lus10006846 [exp] 198 / 1e-66 AT2G19770 229 / 5e-79 profilin 5 (.1) Lus10012936 [exp] 193 / 8e-65 AT4G29350 223 / 2e-76 profilin 2 (.1) Lus10034988 [exp] 192 / 3e-64 AT4G29340 219 / 3e-75 profilin 4 (.1) Lus10011138 [exp] 186 / 1e-61 AT2G19760 225 / 2e-77 profilin 1 (.1) Lus10043040 [exp] 184 / 5e-61 AT5G56600 223 / 1e-76 profilin 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190800 [exp] 197 / 2e-66 AT2G19760 196 / 8e-66 profilin 1 (.1) Potri.003G047700 [exp] 194 / 2e-65 AT4G29340 224 / 5e-77 profilin 4 (.1) Potri.006G235200 [exp] 189 / 4e-63 AT4G29340 216 / 1e-73 profilin 4 (.1) Potri.018G057600 [exp] 186 / 7e-62 AT4G29340 188 / 5e-63 profilin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF00235 [flax] [poplar] Profilin Profilin
Representative CDS sequence Show only first row Show all	>Lus10043041 pacid=23168120 polypeptide=Lus10043041 locus=Lus10043041.g ID=Lus10043041.BGIv1.0 annot-version=v1.0 ATGTCGTGGCAGACGTACGTAGACGAGCACTTGATGTGCGAGATCGAAGGGCAGCAGGGACAACACCTGGCATCTGCCGCCATCGTCGGCCATGACGGTA GCATCTGGGCCCAGAGCTCCGCCTTCCCTCAGTTCAAAGGAACAGAGGTGAGTGACATAATGAAAGATTTCGATGAGCCAGGGCACCTTGCCCCTACCGG ATTGCACATTGCTGGTGCCAAGTATATGGTTATTCAGGGCGAGTCTGGTGCTGTCATCCGTGGCAAGAAGGGAGCTGGAGGTATAACCATAAAAAAGACA GGGCAAGCACTAGTGGTGGGGATGTACGAGGAGCCAGTGACTCCAGGGCAATGCAACATGATTGTGGAGAGGTTGGGTGATTACCTCCTGGAGCAGGGTC TCTAG
AA sequence Show only first row Show all	>Lus10043041 pacid=23168120 polypeptide=Lus10043041 locus=Lus10043041.g ID=Lus10043041.BGIv1.0 annot-version=v1.0 MSWQTYVDEHLMCEIEGQQGQHLASAAIVGHDGSIWAQSSAFPQFKGTEVSDIMKDFDEPGHLAPTGLHIAGAKYMVIQGESGAVIRGKKGAGGITIKKT GQALVVGMYEEPVTPGQCNMIVERLGDYLLEQGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29340		PRF4	profilin 4 (.1)		Lus10043041 [exp]	0	1
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	6.2	1.0000
					Lus10011759 [exp]	8.7	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10024923 [exp]	10.7	1.0000
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10027433 [exp]	12.3	1.0000
					Lus10013545 [exp]	13.8	1.0000
AT4G24975			Plant self-incompatibility pro...		Lus10032383 [exp]	15.1	1.0000
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10038486 [exp]	15.5	1.0000
					Lus10017303 [exp]	16.3	1.0000
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10040003 [exp]	20.3	1.0000
					Lus10000550 [exp]	22.2	1.0000

Compare expression of checked genes

Lus10043041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.