Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29270 251 / 5e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 249 / 5e-83 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 239 / 3e-79 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 237 / 3e-78 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 184 / 1e-57 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 173 / 3e-53 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 168 / 3e-51 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24770 161 / 1e-48 ATVSP2, VSP2 vegetative storage protein 2 (.1.2) AT5G24780 159 / 8e-48 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011140 [exp] 501 / 0 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 236 / 5e-78 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 232 / 2e-76 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 211 / 7e-68 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10023731 [exp] 185 / 8e-58 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 184 / 1e-57 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10017060 [exp] 143 / 2e-42 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10006849 [exp] 107 / 3e-29 AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10038847 [exp] 87 / 5e-21 AT5G51260 97 / 2e-25 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152900 [exp] 269 / 4e-91 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 254 / 7e-85 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 238 / 9e-79 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 189 / 1e-59 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 175 / 4e-54 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 169 / 3e-52 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 170 / 4e-52 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G193500 [exp] 92 / 1e-21 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03767 [flax] [poplar] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Lus10043042 pacid=23168072 polypeptide=Lus10043042 locus=Lus10043042.g ID=Lus10043042.BGIv1.0 annot-version=v1.0 ATGGCCTTAGCCCCCACCGTCCCCGTATTCATTCTGATTTCAGTCCTCTGCCTGTTCAGTCTCGCCTCCGCCTCCCAATCCCTAATACGAATGCCCGGAT ACCGCACCACCACCGGCACGGACAACTTCTGCAACGGATGGAGGTTGTCGGTGGAGACGAACAATGCTGGGTCGTGGTTGACCCCGGAGGAATGCTTAGG GTACCGAGTGGAGTACTTTACCGGAGTTCAGTACGCTTGGGATTTGGCGGTTGTTGCGTCGGAATCGGCAGCGTTCGCGAAGAATGTGAAGCTGGACGGA GACGGAAAGGACGCTTGGGTGTTCGACATTGATGAGACGCTGCTGTCCAATCTCCCGTTCTACGAGAAGTTCGGGTACAGCGCCGATGCATTCAACGAGG ATGCGTGGAACCAGTGGGTGAACTCAACGGCGGCGCCAGCATTATCGGAAAGTTTGGATTTGTACAAGGAGCTCAGAGAGCTGGGATTCACAATATTCAT ACTGACAGGGAGAGATGAAACCCAGAGGAATGCCACAACCTCCAACCTCCTTGGAGCCGGATTCAGGCATTGGAAAAAGTTAATCTTGAGGGGAGATTCC GATAAGGGGAAGACAGCAGTAGTGTACAAATCGGAGAAGAGAGAAGAAATAGTGAAACAAGGGTATAGAATCCAAGGCAACTCCGGAGATCAATGGAGTG ACTTGTTAGGCTACGCAGTTGGAGTTAGATCCTTCAAGTACCCCAATCCTTTGTACTACATTGCCTGA
AA sequence Show only first row Show all	>Lus10043042 pacid=23168072 polypeptide=Lus10043042 locus=Lus10043042.g ID=Lus10043042.BGIv1.0 annot-version=v1.0 MALAPTVPVFILISVLCLFSLASASQSLIRMPGYRTTTGTDNFCNGWRLSVETNNAGSWLTPEECLGYRVEYFTGVQYAWDLAVVASESAAFAKNVKLDG DGKDAWVFDIDETLLSNLPFYEKFGYSADAFNEDAWNQWVNSTAAPALSESLDLYKELRELGFTIFILTGRDETQRNATTSNLLGAGFRHWKKLILRGDS DKGKTAVVYKSEKREEIVKQGYRIQGNSGDQWSDLLGYAVGVRSFKYPNPLYYIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	0	1
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037744 [exp]	8.7	0.7800
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10019197 [exp]	9.5	0.7288
AT1G69330			RING/U-box superfamily protein...		Lus10026648 [exp]	10.1	0.7080
AT1G08700		PS1	Presenilin-1 (.1)		Lus10009518 [exp]	12.2	0.7764
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10040111 [exp]	16.1	0.6801
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	18.1	0.7266
AT2G42310			unknown protein		Lus10042351 [exp]	19.1	0.7678
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037745 [exp]	22.3	0.7691
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10024798 [exp]	23.9	0.6750
AT3G05170			Phosphoglycerate mutase family...		Lus10029974 [exp]	24.5	0.6439

Compare expression of checked genes

Lus10043042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.