Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48320 150 / 1e-46 Thioesterase superfamily protein (.1) AT5G48950 135 / 5e-41 Thioesterase superfamily protein (.1.2) AT2G45630 84 / 1e-19 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 79 / 1e-17 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G79870 62 / 1e-11 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT5G28310 61 / 2e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011142 [exp] 214 / 1e-71 AT1G48320 203 / 4e-68 Thioesterase superfamily protein (.1) Lus10006220 [exp] 167 / 3e-53 AT1G48320 218 / 5e-74 Thioesterase superfamily protein (.1) Lus10011141 [exp] 108 / 8e-31 AT2G45630 139 / 2e-41 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041393 [exp] 103 / 1e-26 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036537 [exp] 103 / 1e-26 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041391 [exp] 79 / 6e-19 AT1G12550 131 / 3e-38 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10036538 [exp] 76 / 7e-18 AT2G45630 132 / 2e-38 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036869 [exp] 73 / 6e-17 AT1G48320 124 / 1e-37 Thioesterase superfamily protein (.1) Lus10035866 [exp] 69 / 5e-14 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G003800 [exp] 139 / 3e-42 AT1G48320 170 / 1e-54 Thioesterase superfamily protein (.1) Potri.010G003600 [exp] 126 / 3e-37 AT1G48320 197 / 1e-65 Thioesterase superfamily protein (.1) Potri.014G073500 [exp] 89 / 4e-21 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151100 [exp] 88 / 6e-21 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 87 / 2e-20 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 85 / 1e-19 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G119000 [exp] 80 / 6e-18 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 76 / 2e-16 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.014G073600 [exp] 66 / 1e-14 AT2G45630 73 / 4e-17 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 69 / 6e-14 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10043043 pacid=23168282 polypeptide=Lus10043043 locus=Lus10043043.g ID=Lus10043043.BGIv1.0 annot-version=v1.0 ATGGAGAATCATGGAAATGCATCATCAAAAACACAACATATGAGCTCCCCTCTTCGACTTTTGGGGTTCGAATTCGAAGAATTCACAGCAAGCAAAGTGA CTGGGCGACTTGTGGTAACTGAAAGGTGTGTGCAGCCGTTCAAAGTCCTGCACGGGGGAGTGTCAGCCCTGATAGCCGAGTCACTAGCTAGCACAGGTGC ATATATAGCATCAGGGTACAAAAGGATGGCAGGAATTCACCTCAGCATTAGCCATTTGAAGCATGCTGATCTCGGCGACCTTATTCTCGCTGAATCAACC CCTGTCAGTGTTGGCAAAACCATTCAGGATGGAATCGCCGGCGGTATTGCAGGACTGGATGTGTTCCAGGACGAGCCTGGCGTTCCTCAAGTGATAATGG AGTTGGACAACGTTGTGTTGAGTCCTCATTCTGCTATTTTCACCACGGAACCGGTGATGGGCATTGCTCGGCTTGTGGTGGGAAAATTGGAAGCTTTCTT CTCAAACAAACCCCTGCTGTCCGAGTACGAGGATGATGATGCATCATCTAATTAA
AA sequence Show only first row Show all	>Lus10043043 pacid=23168282 polypeptide=Lus10043043 locus=Lus10043043.g ID=Lus10043043.BGIv1.0 annot-version=v1.0 MENHGNASSKTQHMSSPLRLLGFEFEEFTASKVTGRLVVTERCVQPFKVLHGGVSALIAESLASTGAYIASGYKRMAGIHLSISHLKHADLGDLILAEST PVSVGKTIQDGIAGGIAGLDVFQDEPGVPQVIMELDNVVLSPHSAIFTTEPVMGIARLVVGKLEAFFSNKPLLSEYEDDDASSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48320			Thioesterase superfamily prote...		Lus10043043 [exp]	0	1
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	3.9	0.7942
AT2G26840			unknown protein		Lus10036059 [exp]	4.9	0.7827
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10033788 [exp]	6.9	0.7537
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	7.5	0.7647
AT2G21190			ER lumen protein retaining rec...		Lus10042389 [exp]	8.0	0.7197
AT5G25510			Protein phosphatase 2A regulat...		Lus10012116 [exp]	9.5	0.7541
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10017120 [exp]	10.4	0.7468
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Lus10000171 [exp]	11.2	0.7350
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10026925 [exp]	11.8	0.7015
AT1G17820			Putative integral membrane pro...		Lus10038326 [exp]	12.8	0.7421

Compare expression of checked genes

Lus10043043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.