Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26270 841 / 0 PFK3 phosphofructokinase 3 (.1) AT5G56630 831 / 0 PFK7 phosphofructokinase 7 (.1) AT4G32840 763 / 0 PFK6 phosphofructokinase 6 (.1) AT4G29220 762 / 0 PFK1 phosphofructokinase 1 (.1) AT5G61580 703 / 0 PFK4 phosphofructokinase 4 (.1.2) AT5G47810 483 / 1e-165 PFK2 phosphofructokinase 2 (.1) AT2G22480 422 / 1e-140 PFK5 phosphofructokinase 5 (.1) AT4G04040 79 / 6e-15 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G20950 76 / 4e-14 Phosphofructokinase family protein (.1) AT1G76550 75 / 7e-14 Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011143 [exp] 1105 / 0 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 918 / 0 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10005488 [exp] 766 / 0 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 739 / 0 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 506 / 2e-174 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10002648 [exp] 407 / 1e-134 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10012738 [exp] 404 / 2e-133 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10039993 [exp] 188 / 4e-56 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10008375 [exp] 87 / 5e-20 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G069200 [exp] 839 / 0 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.006G152600 [exp] 838 / 0 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 718 / 0 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.016G002700 [exp] 520 / 8e-180 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G235132 [exp] 416 / 1e-142 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.007G010300 [exp] 390 / 3e-128 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.006G235066 [exp] 328 / 7e-109 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.001G079501 [exp] 187 / 2e-55 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.001G079450 [exp] 92 / 1e-22 AT5G61580 90 / 7e-23 phosphofructokinase 4 (.1.2) Potri.002G003100 [exp] 79 / 3e-15 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00365 [flax] [poplar] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Lus10043044 pacid=23168205 polypeptide=Lus10043044 locus=Lus10043044.g ID=Lus10043044.BGIv1.0 annot-version=v1.0 ATGGATCAGCAACCTGTATGGGTCTCGCCGGCAACAGGACTGCCACCCGCTTCCCTTGCAATCAGCATGGCAATGGTGGCTATGACAACTTTTAAACGTT GGGTCGAGGACCGGCCATTGAAAGCAAGTGATAAGGTGGAGTTGCCGATGGCACAACTGGTGCCGACGTCTCCATTGCGGGAATATAGGTTCTGCACCGA AGGTTCCTTCATCCACAAAAGGATGGTTAGCTCCGAGACCACTCGGTGGAAACCCCCTAGGATTTGGCAACCAAGGCGAGAGGTCAAAATCACTGTTGCT GTCTCCTATAAGTATGGATGGCCTCTCTGCTCCTCTCTCCCAAGACTTTTCAAAAAGTTCCCCCTCCGGTGCATGGATTCGATTTTTTCTCTACACCACT CGTCGCCATTAATCCCCCTTACCTCTTCCTCTCACCGCTCCACACTAGCCTCTGATTCCGCTAAGCTTTCTCCTTCTTCCCTCACCTTCACTCCTCCTCC TTCCGATTTCAATTCCCTTTCCCGGCTACGATTCATGGCGGCAGCGTCTCATACCCCCGCCGGCGCTAACGGCCTCACCACCCCCAAGATTGTCAACGGC GAGTACGGCTATGTTCTAGAAGATGTCCCTCATTTGACCGACTACCTTTCTGATCTTCCTACTTATCCCAATCCTTTGCAAGACAATCCTGCATACTCAG TCGTCAAGCAGTACTTTGTTGATGTAGATGACACCGTTCCGCAAAGGATTGTTGTCCACAAGGATAGTCCTAGAGGGATCCATTTCCGACGTGCTGGACC AAGGCAAAAGGTCTACTTCGAGCCTGATGAAGTCCAAGCTTGTATTGTGACATGTGGTGGTCTCTGCCCTGGACTCAACACTGTAATCAGAGAAATTGTC TCTACCTTGTATTCCATGTATGGCGTGAAGAGAGTGCTTGGCATTGATGGAGGATACAAGGGCTTCTATGCTCGAAACACAATCGAGCTCACGCCTAAGG TTGTGAATGATATCCACAAACGTGGAGGAACCATCCTTGGGACTTCACGAGGAGGCCATGATACCCAAAAGATAGTAGACAGCATTCAGGACCGGGGAAT TAATCAGGTGTACATAATAGGAGGTGATGGGACACAGAAAGGGGCTTCAGTTATATATGAGGAAGTTAGAAGACGGGGGCTCAAAGTTGCTGTTGCTGGC ATCCCCAAAACAATTGATAACGACATACCGGTGATTGACAAATCATTTGGCTTTGACACTGCGGTTGAAGAGGCTCAACGTGCTATTAATGCTGCTCATG TTGAAGCTGAAAGTGTTGAAAATGGCATAGGTCTTGTGAAGTTGATGGGTCGCTATAGTGGGTTTATTGCCATGTATGCTACTCTTGCTAGTAGAGATGT AGATTGCTGCCTTATTCCAGAATCACCATTCTACCTGAAAGGGGAAGGTGGACTCTTTGAGTTTGTTGAGAAACGGCTCAAAGAAGATGGGCACATGGTT ATTGTAATAGCTGAAGGTGCTGGACAGGAGCTCCTTGCTGAGAGCCAACAGATGACAGATGCTTCAGGAAATAAGCTTCTCCAAGACGTTGGGCTGTGGT TATCACAGAATATAAAGGATCATTTGAAAAAACAGAAGATGCCCATAAACCTTAAATACATAGATCCCACATACATGATCCGTGCTATTCCAAGCAATGC ATCCGACAATGTCTACTGCACACTGCTCGCTCAAAGTTGTGTTCATGGTGCAATGGCTGGCTACACTGGTTATACATCTGGTCTTGTCAATGGCCGACAA ACATACATACCTTTCTACCGAATAACTGAGAAACAGAACAATGTGGTCATCACGGACAGGATGTGGGCTAGGCTCCTATCTTCAACAAATCAGCCAAGCT TTATGTGTCCTAAACTTGTGGCAGAGAAGAAAAAGGAAATGCAAACCAATACGGAGGCACAGCCATCATGCGCATTGTTGGACGATGGGAACACTGGCGC TGATAAGAAGGCGACAACCAAAGAGGTCAGGAAGTGA
AA sequence Show only first row Show all	>Lus10043044 pacid=23168205 polypeptide=Lus10043044 locus=Lus10043044.g ID=Lus10043044.BGIv1.0 annot-version=v1.0 MDQQPVWVSPATGLPPASLAISMAMVAMTTFKRWVEDRPLKASDKVELPMAQLVPTSPLREYRFCTEGSFIHKRMVSSETTRWKPPRIWQPRREVKITVA VSYKYGWPLCSSLPRLFKKFPLRCMDSIFSLHHSSPLIPLTSSSHRSTLASDSAKLSPSSLTFTPPPSDFNSLSRLRFMAAASHTPAGANGLTTPKIVNG EYGYVLEDVPHLTDYLSDLPTYPNPLQDNPAYSVVKQYFVDVDDTVPQRIVVHKDSPRGIHFRRAGPRQKVYFEPDEVQACIVTCGGLCPGLNTVIREIV STLYSMYGVKRVLGIDGGYKGFYARNTIELTPKVVNDIHKRGGTILGTSRGGHDTQKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVAVAG IPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLKGEGGLFEFVEKRLKEDGHMV IVIAEGAGQELLAESQQMTDASGNKLLQDVGLWLSQNIKDHLKKQKMPINLKYIDPTYMIRAIPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQ TYIPFYRITEKQNNVVITDRMWARLLSSTNQPSFMCPKLVAEKKKEMQTNTEAQPSCALLDDGNTGADKKATTKEVRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10043044 [exp]	0	1
AT1G76600			unknown protein		Lus10033761 [exp]	1.7	0.9806
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	4.5	0.9766
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	5.3	0.9793
					Lus10018421 [exp]	5.7	0.9780
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10011143 [exp]	6.6	0.9631
AT3G08650			ZIP metal ion transporter fami...		Lus10035606 [exp]	7.3	0.9705
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	8.4	0.9762
					Lus10002596 [exp]	10.1	0.9728
					Lus10026740 [exp]	11.2	0.9671
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	11.7	0.9710

Compare expression of checked genes

Lus10043044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.