Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11700 1422 / 0 unknown protein AT4G32920 1358 / 0 glycine-rich protein (.1.2.3) AT5G47020 1060 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011144 [exp] 2021 / 0 AT5G11700 1470 / 0.0 unknown protein Lus10005497 [exp] 1409 / 0 AT5G11700 1842 / 0.0 unknown protein Lus10007461 [exp] 1405 / 0 AT5G11700 1835 / 0.0 unknown protein Lus10007257 [exp] 832 / 0 AT5G47020 1321 / 0.0 unknown protein Lus10000229 [exp] 256 / 1e-78 AT4G32920 182 / 5e-54 glycine-rich protein (.1.2.3) Lus10007259 [exp] 121 / 6e-30 AT5G47020 218 / 2e-64 unknown protein Lus10007258 [exp] 115 / 1e-29 AT5G47020 169 / 1e-49 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G234500 [exp] 1469 / 0 AT5G11700 1793 / 0.0 unknown protein Potri.018G058300 [exp] 1431 / 0 AT5G11700 1779 / 0.0 unknown protein Potri.003G086200 [exp] 1116 / 0 AT5G47020 1620 / 0.0 unknown protein Potri.001G148300 [exp] 1111 / 0 AT5G47020 1624 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043045 pacid=23168337 polypeptide=Lus10043045 locus=Lus10043045.g ID=Lus10043045.BGIv1.0 annot-version=v1.0 ATGGCTCCTGCAGCAGCTCCTTTGTCACACCTTCTGTTCTCCTTCGTCTTCTGCTTCTGCTTCCTGTCTACTCCTTGCATGAGTGTCGCCGATCTGGATG ATGGCGGATTCTCCATCTCCGGCTTCGATTCTGTTTTCTATCCTGGCGACTACAGTCCTCCGTCGCCCCCTGCGCCGCCTCCGCCTCCGCTCCCGCCCTC TGTGACCTGCGAGGGGGATCTCAAAGGTGTAGGCTCCTTAGACTCTGTGTGCAAGCTGAGTTCGTCTTTGAATTTCACTCATGACGTGTACATAGGAGGG GGCGGGTCATTGGTCTTGCTTCCTGATGTCGTTTTGAGCTGCGCAGTCCGCGGCTGTGCAATTTTGGTCAGTGTCGGAGATGAGATCAGGATGGGGGAGA AGGCGGCGATAATTGCTGGGACTGTCTGGCTCACTGCTCAGAATGCAACTTTTAGTTACGGCTCCTTGATTAACTCTACTGCCTTGGCTGGTGCGCCTCC TGAAGAGACCAGTGGAACTCCTGGTGGCGTTCAAGGAGCTGGTGGTGGATATGGAGGAAGGGGAGCTAGCTGTGTCTCGGATAATACCAAGTTGCCGGAG GATGTGTGGGGAGGGGACGCTTATTCTTGGGCGGACTTGAACGCTCCTTGGAGTTATGGTAGTAAAGGTGGAACTACTAGCAAGGAGGAGAATTATGGGG GAGAAGGAGGCGGAAGGATTGGAATGAATATTACCAACTCAATTGAGCTTTATGGGACTTTGTTGGCGGAAGGTGGAGATGGTGGTATAAAGGGTGGAGG GGGTTCAGGTGGCAGCATCCGTATCATCGGTCATAGAATGGTAGGGGATGGTACATTAAGCGCTTCTGGTGGTAATGGATTTGCTGGAGGTGGCGGTGGA AGAGTTTCTGTTGATGTTTTCAGCAGACATGATGATATATCGATCTTTGTCCATGGTGGAAGGAGTCTTGGCTGCACCGAAAATTCAGGTGCTGCAGGCA CATATTATGATGCTGTTCCTCGGAGTCTTACAGTTAATAACAATAACATGTCCACCAACACTGATACACTTCTGTTGGAATTCCCCAAGCAGCCACTTTG GACCAATGTTAACATTCAGAATCGTGCGAGGGCTTCTGTTCCTTTATTTTGGAGTCGGGTTCAGGTCCATGGACAAATCAGTTTATCCAGTGAGGCAGTG ATGAGCTTTGGCCTTCCGCATTATGCGACATCTGAATTTGAGTTGATGGCTGAAGAACTTCTAATGAGCAACTCAGTTGTTAAGGCAGGTGACAGACTAT TGTTCTTTCTTCCAAATCTTTTTCCTTCCTTTTCTGCACTTTGTGATGATGTTTCATGCTGCCAAATGCCTTATTTTCTAATGCTCATTTATAACCAGAT ATATGGGGCCCTTCGTATGTCCGTTAAGATATTGTTGATGTGGAATTCCAAGATGCTTATAGATGGAGGTGGTGATGAGCTTGTGGCTACTTCTGCTCTC GAGGCCAGCAACCTAGTTGTTCTCAAGGAATCTTCAGCAGTACACTCCAATGCAAATCTGGAAGTTCATGGGCAAGGCTTTTTTAATTTGTCTGGACCAG GGAACATGATTGAAGCTCAAAGGCTAATTCTATCCTTGTTTTTTGGTATCTATGTTGAACCTGGATCTGTTCTTAGAGGCCCCTTGAAGGATGCAGATGA TCGTAGCATGACGCCACGGCTCTACTGTGAAGATCGAGAATGCCCAAGGGAACTGATTCATCCGCCTGAAGATTGTAATATGAACTCTTCATTGGCCTTT ACTCTCCAGATTTGTCGAGTTGAAGAGGTTATTGTTGGAGGCTCAGTATCGGGATCTGTTGTTCATTTTCGTCTAGTCAGAAATATTATTGTCAATTCTT CTGGAGTAATCAGTGCTTCTGGATTGGGATGTACTGGTGGTATTGGTAGAGGAAACATTTTTGACAATGGTCTTGGTGGTGGAGGTGGACATGGCGGAAA AGGTGGTAAAGGATATTATAATGGAAGTTTCGTGGATGGTGGTGTTGCTTATGGAAATGCTGAATTGCCTTGTGAACTTGGAAGCGGCAGGGGAAATTAT AGTTTAGCTGGATCGACTGCAGGCGGTGGTATAATTGTGATCGGTTCAATGGAGCATGCGCTGTCCAGTTTGTCTGTTTTTGGCTCACTTAGAGCAGATG GTGAAAGCTTCGGAGAGGACCCAAAGAAAGATGGTGGAATGACTTCAAGCATAGGTCCTGGAGGTGGTGCTGGTGGAACTATTCTTTTATTTGTGCATTC AGTCACACTTGCGAATTCTTCTGCTATTTCCACCATGGGAGGGCATGGGAGTCCTAACGGCGGAGGTGGTGGAGGTGGTGGAAGGGTTCACTTCCATTGG GCGAATATTCCTTCAGGAGATGAGTATATGCCAATAGCAAGCTCAAATGGGAGCATTCAGACTGGAGGGGGGCTTGGTAGAGGCCAGGGTCATACAGGAG ATGATGGAACTGTTACTGGGAAGGCCTGTCCGGAAGGGCTCTATGGTATCTTCTGCGAGGAGTGCCCCTTGGGTACATTCAAGAATATCAGTGGATCTGA TAAAGCCCTGTGTTATAGTTGCCCATTCTACGAGCTACCAAGTCGTGCCATTTATGTCACTGTCCGTGGTGGTGTTACTGAAAGACCTTGTCCATACAAG TGTGTGACAGACAGATATCACATGCCAAACTGTTACACAACCCTAGAGGAGTTGGTATACACTTTTGGCGGGCCGTGGTTGTTTAGTCTTATTCTATTGG GTCTACTCATCCTGTTAACTCTAGTGCTTAGTGTTGCACGAATGAAATATGTTGCGGGGGAGGAATTACCAACTCTTGTGCCTGCTCAGCGGGGTTCTCG AATTGATCACTCGTTCCCTTTCCTCGAGTCACTGAATGAGGTATTGGAAACGAACAGAACCGAAGAATCTCGGAGTCATGTGCATAGGATGTTTTTTATG GGGGCAAATACTTTCAGTGAACCTTGGCACTTAACTCATTCTCCTCCTAAACAAGTTATTGAGATTGTGTATGAGGATGCGTTCAACAGGTTTGTAGATG AGATCAATGGTTTGGCTGCATATCAGTGGTGGCAAGGATCTGTATATAGCATCCTTTCTGTTCTCGCATATCCACTTGCCTACTCCTGGCTACAGCAGTG TAGGAAAAGGAAACTTCAGCAGCTACGTGATTTTGTACGTTCAGAATATGATCATGCTTGCTTACGGTCTTGTCGTTCCCGTGCTCTTTACGAAGGACTC AAGGTGGGAGCCACTTTGGACCTAATGCTTGCATACTTGGACTTTTTCCTTGGTGGAGATGAGAAGAGACCTGATCTTCCTCCTAGTCTTCATCAGAGAT TTCCCATGACTTTAGTTTTGGGGGGAGATGGAAGTTACATGGCACCTTTCTCACTTCACAATGATAATATTCTCACCAGTCTCATGAGCCAGGCTGTTCC ACCAACCATCTGGTATAGGCTAGTGGCTGGTCTTAATGCTCAATTACGTTTGGTTCAACGCGGACGCTTGAAATTTACATTTCTTCGAGTTATTTCCTGG ATTGAAACACATGCGAATCCTACGTTGGCTACCTATGGAATACGTGTGGGTCTTGCTTGGTTTCAGCCCACTGCCCCTGGTTATTGTCAGTTTGGACTTG TAGTATATGCCACTGGAGATAATAATACACTGCAGTCAGGCGACGGGAGTGGGATTGTATGTTCCCCTCTGGCGAACAGGGGTGATCAAAGGCAATATCC GAAGGGTACGGAAGCTCTGCTGACACGTAAAGTATGTGGAGAAGGAATTTTGAATTCGAGTACTCTACAGACACTTAAAATAGGAAGGGCTTCATTTTCT TTCCCTTTCTTGATATTCAACATCAGACCTGTTGGGCACCAGGACCTTGTGGGTTTGCTGATATCTATGGTCCTTCTAGGAGATATTAGCTTAGTGATGC TTAGTCTGCTACAGATGTACTCGATATCGCTGCTCAACTTCCTATTAGTTTTGTTTATTCTTCCTCTGGGGATATTGTTTCCATTCCCTGCTGGGATCAG TGCTTTGTTCAGTCATGGACCGAGACGTTCGGCAGGTCTTTCTCGTCTATATGCTTTGTGGAATTTTACATCCTTGATCAACGTTGTGGTAGCATTAGTA TGCGGATTTGTTCATTACATGAGTCGCTCAAGGGAAAGCCACCTCAACTTGCCGTCCTGGAATTTTAGCATGGATGATAGCGAGTGGTGGATACTTCCAT GTGGGCTGTTGGTTTGTAAGATTGTGCAAGCACGGCTGATTGATTGTCACATTGCTAACCAAGAAATCCAAGACTACTCCTTGTACAGTAGCGATCCAGG AGTGTTCTGGCAAGCTTGA
AA sequence Show only first row Show all	>Lus10043045 pacid=23168337 polypeptide=Lus10043045 locus=Lus10043045.g ID=Lus10043045.BGIv1.0 annot-version=v1.0 MAPAAAPLSHLLFSFVFCFCFLSTPCMSVADLDDGGFSISGFDSVFYPGDYSPPSPPAPPPPPLPPSVTCEGDLKGVGSLDSVCKLSSSLNFTHDVYIGG GGSLVLLPDVVLSCAVRGCAILVSVGDEIRMGEKAAIIAGTVWLTAQNATFSYGSLINSTALAGAPPEETSGTPGGVQGAGGGYGGRGASCVSDNTKLPE DVWGGDAYSWADLNAPWSYGSKGGTTSKEENYGGEGGGRIGMNITNSIELYGTLLAEGGDGGIKGGGGSGGSIRIIGHRMVGDGTLSASGGNGFAGGGGG RVSVDVFSRHDDISIFVHGGRSLGCTENSGAAGTYYDAVPRSLTVNNNNMSTNTDTLLLEFPKQPLWTNVNIQNRARASVPLFWSRVQVHGQISLSSEAV MSFGLPHYATSEFELMAEELLMSNSVVKAGDRLLFFLPNLFPSFSALCDDVSCCQMPYFLMLIYNQIYGALRMSVKILLMWNSKMLIDGGGDELVATSAL EASNLVVLKESSAVHSNANLEVHGQGFFNLSGPGNMIEAQRLILSLFFGIYVEPGSVLRGPLKDADDRSMTPRLYCEDRECPRELIHPPEDCNMNSSLAF TLQICRVEEVIVGGSVSGSVVHFRLVRNIIVNSSGVISASGLGCTGGIGRGNIFDNGLGGGGGHGGKGGKGYYNGSFVDGGVAYGNAELPCELGSGRGNY SLAGSTAGGGIIVIGSMEHALSSLSVFGSLRADGESFGEDPKKDGGMTSSIGPGGGAGGTILLFVHSVTLANSSAISTMGGHGSPNGGGGGGGGRVHFHW ANIPSGDEYMPIASSNGSIQTGGGLGRGQGHTGDDGTVTGKACPEGLYGIFCEECPLGTFKNISGSDKALCYSCPFYELPSRAIYVTVRGGVTERPCPYK CVTDRYHMPNCYTTLEELVYTFGGPWLFSLILLGLLILLTLVLSVARMKYVAGEELPTLVPAQRGSRIDHSFPFLESLNEVLETNRTEESRSHVHRMFFM GANTFSEPWHLTHSPPKQVIEIVYEDAFNRFVDEINGLAAYQWWQGSVYSILSVLAYPLAYSWLQQCRKRKLQQLRDFVRSEYDHACLRSCRSRALYEGL KVGATLDLMLAYLDFFLGGDEKRPDLPPSLHQRFPMTLVLGGDGSYMAPFSLHNDNILTSLMSQAVPPTIWYRLVAGLNAQLRLVQRGRLKFTFLRVISW IETHANPTLATYGIRVGLAWFQPTAPGYCQFGLVVYATGDNNTLQSGDGSGIVCSPLANRGDQRQYPKGTEALLTRKVCGEGILNSSTLQTLKIGRASFS FPFLIFNIRPVGHQDLVGLLISMVLLGDISLVMLSLLQMYSISLLNFLLVLFILPLGILFPFPAGISALFSHGPRRSAGLSRLYALWNFTSLINVVVALV CGFVHYMSRSRESHLNLPSWNFSMDDSEWWILPCGLLVCKIVQARLIDCHIANQEIQDYSLYSSDPGVFWQA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11700			unknown protein		Lus10043045 [exp]	0	1
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	1.7	0.8823
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10004100 [exp]	4.0	0.8688
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	8.8	0.8407
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10007734 [exp]	11.4	0.7988
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	13.9	0.8277
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	14.1	0.8110
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10034240 [exp]	14.2	0.8108
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	15.5	0.8096
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10036682 [exp]	18.0	0.7923
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10018854 [exp]	18.3	0.7842

Compare expression of checked genes

Lus10043045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.