Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49510 300 / 2e-105 PFD3, PDF3 prefoldin 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011145 [exp] 351 / 2e-125 AT5G49510 306 / 9e-108 prefoldin 3 (.1.2) Lus10017066 [exp] 335 / 6e-119 AT5G49510 308 / 3e-108 prefoldin 3 (.1.2) Lus10037784 [exp] 243 / 9e-83 AT5G49510 221 / 3e-74 prefoldin 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147600 [exp] 308 / 1e-108 AT5G49510 293 / 2e-102 prefoldin 3 (.1.2) Potri.008G103400 [exp] 301 / 1e-105 AT5G49510 295 / 6e-103 prefoldin 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0200 [flax] [poplar] Prefoldin PF02996 [flax] [poplar] Prefoldin Prefoldin subunit
Representative CDS sequence Show only first row Show all	>Lus10043046 pacid=23168372 polypeptide=Lus10043046 locus=Lus10043046.g ID=Lus10043046.BGIv1.0 annot-version=v1.0 ATGGCATCGTCATCTTCATCATCGTCAACGGCTACGGAAAGAAGAGGGATTCCGGGAGCTCAGTTCGTGGAAGATGTGGAGATCTATCTTACAAAATCTG GACTCGATGCCAACTCTGCCCTAACTTTCCTCCAAGAAAGACTTCAGCAGTACAGAGTGGTGGAGATGAAACTGCTTGCTCAGCAACGGGATCTTCAGGC AAAGATCCCAGACATTGAGAAATGTTTGGATGTGGTTGCCACATTGCAGTCTAAGAAGGGTACTGGTGAGTCACTTGTTACGGACTTTGAAATAGCTGAA GGCGTCTATTCTCGGGCACGTATTGATGAAAGCAACTCAGTTTGTTTGTGGCTGGGAGCGAATGTTATGTTGGAGTATTCATGTGAAGAGGCCACGGCTA TGCTTCAGAAGAATTTAGAGAATGCTAAAGCTAGTTTGGAAGTCCTTATTGCTGATCTGCAGTTCCTAAGGGATCAAGTTACAGTAACACAGGTGACTGT TGCTCGTATGTATAATTGGGATATTCATCAGCGCAGATTGAGACAGGGAACTGCTGCTGTTTAA
AA sequence Show only first row Show all	>Lus10043046 pacid=23168372 polypeptide=Lus10043046 locus=Lus10043046.g ID=Lus10043046.BGIv1.0 annot-version=v1.0 MASSSSSSSTATERRGIPGAQFVEDVEIYLTKSGLDANSALTFLQERLQQYRVVEMKLLAQQRDLQAKIPDIEKCLDVVATLQSKKGTGESLVTDFEIAE GVYSRARIDESNSVCLWLGANVMLEYSCEEATAMLQKNLENAKASLEVLIADLQFLRDQVTVTQVTVARMYNWDIHQRRLRQGTAAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	0	1
AT5G65530			Protein kinase superfamily pro...		Lus10025713 [exp]	1.4	0.9368
					Lus10003083 [exp]	2.4	0.9277
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	5.4	0.9407
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033337 [exp]	6.5	0.9319
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000516 [exp]	7.4	0.9206
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	7.6	0.9110
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10000490 [exp]	9.2	0.9147
AT1G56140			Leucine-rich repeat transmembr...		Lus10020688 [exp]	11.2	0.8822
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10003136 [exp]	12.0	0.9309
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	13.0	0.9175

Compare expression of checked genes

Lus10043046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.