Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50720 124 / 6e-37 Stigma-specific Stig1 family protein (.1) AT4G26880 117 / 7e-34 Stigma-specific Stig1 family protein (.1) AT5G55110 112 / 6e-32 Stigma-specific Stig1 family protein (.1) AT1G11925 75 / 1e-17 Stigma-specific Stig1 family protein (.1) AT1G53130 64 / 4e-13 GRI GRIM REAPER, Stigma-specific Stig1 family protein (.1) AT1G50650 58 / 7e-11 Stigma-specific Stig1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011146 [exp] 225 / 3e-76 AT1G50720 125 / 2e-37 Stigma-specific Stig1 family protein (.1) Lus10011117 [exp] 216 / 2e-72 AT1G50720 117 / 6e-34 Stigma-specific Stig1 family protein (.1) Lus10041930 [exp] 75 / 3e-17 AT1G53130 152 / 1e-47 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Lus10005544 [exp] 73 / 4e-17 AT1G53130 125 / 6e-38 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Lus10020831 [exp] 61 / 7e-12 AT1G11925 100 / 7e-28 Stigma-specific Stig1 family protein (.1) Lus10012679 [exp] 61 / 8e-12 AT1G11925 104 / 3e-29 Stigma-specific Stig1 family protein (.1) Lus10006512 [exp] 58 / 4e-11 AT1G50650 71 / 5e-16 Stigma-specific Stig1 family protein (.1) Lus10000696 [exp] 59 / 1e-10 AT1G50650 100 / 3e-26 Stigma-specific Stig1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356600 [exp] 140 / 7e-43 AT1G50720 133 / 2e-40 Stigma-specific Stig1 family protein (.1) Potri.011G080800 [exp] 130 / 5e-39 AT1G50720 130 / 3e-39 Stigma-specific Stig1 family protein (.1) Potri.004G030900 [exp] 91 / 1e-23 AT1G11925 101 / 4e-28 Stigma-specific Stig1 family protein (.1) Potri.004G006800 [exp] 86 / 5e-22 AT1G11925 80 / 1e-19 Stigma-specific Stig1 family protein (.1) Potri.011G008932 [exp] 82 / 5e-20 AT1G11925 91 / 4e-24 Stigma-specific Stig1 family protein (.1) Potri.004G006900 [exp] 81 / 5e-20 AT1G11925 108 / 4e-31 Stigma-specific Stig1 family protein (.1) Potri.010G228100 [exp] 72 / 1e-16 AT1G11925 94 / 2e-25 Stigma-specific Stig1 family protein (.1) Potri.004G007200 [exp] 72 / 5e-16 AT1G11925 98 / 5e-26 Stigma-specific Stig1 family protein (.1) Potri.004G007000 [exp] 71 / 5e-16 AT1G11925 96 / 5e-26 Stigma-specific Stig1 family protein (.1) Potri.004G007100 [exp] 70 / 1e-15 AT1G11925 98 / 1e-26 Stigma-specific Stig1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04885 [flax] [poplar] Stig1 Stigma-specific protein, Stig1
Representative CDS sequence Show only first row Show all	>Lus10043047 pacid=23168430 polypeptide=Lus10043047 locus=Lus10043047.g ID=Lus10043047.BGIv1.0 annot-version=v1.0 ATGACCACCACCACGGTTCTCGTCAAGACAATGCTGCTCATATTCGTGGCCACCGCCATCTCCGTCACCCTCACCATGCAAACCATCAACCCTCCTCAAC AAGAAACCACTAGGCCCGTTAGCCGATTCCTCAAGCAAGAAGACACTTCTAGTACTACTCCTACAGGCGATGGCATCCCCGGGATCGGTGGAAACAACGG AAACGGTGAAGGAGGGGGAGGGATCAAGAACCCCAAGGCCGCCGACCACTGCAACAAAGACCCCGGTTTGTGCGAGGCTCTGTACGGTAAGGGCTTTGCC TGTTGCAACAACAAGTGTAAGGACTTGAAATTCGACAAGCAGAACTGCGGGGCGTGCAAGACCAAGTGCGACTTCATGGACGAATGCTGCCGCGGGGAGT GCGTCTTCCTGGCCATCGACAAGCGCCACTGCGGAAAGTGCAATTCCCCTTGTCCCCCTGGCCAGCCCTGCGTCTATGGCATGTGCAACTACGCTTGA
AA sequence Show only first row Show all	>Lus10043047 pacid=23168430 polypeptide=Lus10043047 locus=Lus10043047.g ID=Lus10043047.BGIv1.0 annot-version=v1.0 MTTTTVLVKTMLLIFVATAISVTLTMQTINPPQQETTRPVSRFLKQEDTSSTTPTGDGIPGIGGNNGNGEGGGGIKNPKAADHCNKDPGLCEALYGKGFA CCNNKCKDLKFDKQNCGACKTKCDFMDECCRGECVFLAIDKRHCGKCNSPCPPGQPCVYGMCNYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50720			Stigma-specific Stig1 family p...		Lus10043047 [exp]	0	1
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	1.4	0.9913
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	2.4	0.9901
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	3.9	0.9852
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	4.0	0.9814
AT5G60520			Late embryogenesis abundant (L...		Lus10015149 [exp]	5.3	0.9728
AT5G60520			Late embryogenesis abundant (L...		Lus10015148 [exp]	5.7	0.9682
AT1G50720			Stigma-specific Stig1 family p...		Lus10011146 [exp]	6.7	0.9705
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10013782 [exp]	7.1	0.9623
AT1G50720			Stigma-specific Stig1 family p...		Lus10011117 [exp]	8.4	0.9407
AT3G14470			NB-ARC domain-containing disea...		Lus10002609 [exp]	8.5	0.9744

Compare expression of checked genes

Lus10043047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.